EnrichmentMap 3.3.0

New in EnrichmentMap 3.3:

• The colors used in the 'Color by DataSet' chart can be customized.
• It is no longer a strict error when gene sets are missing from the GMT file. The user may choose to continue to create the network without the missing gene sets.
• The Heat Map panel can sort ranks automatically based on the leading edge.
• The Heat Map panel can filter Data Sets based on node/edge selection.
• Support for importing Enrichr files when creating an EnrichmentMap network.
• New "Create Command" button in the Create Enrichment Map Dialog shows equivalent command for automation.
• New "Getting Started" section on the Create Enrichment Map Dialog to better help new users.
• An EnrichmentMap network can now be created from a STRING or GeneMania network.
• Bug Fixes

v3.3.0-BETA3

Set version to 3.3.0-BETA3

v3.3.0-BETA2

Set version to 3.3.0-BETA2

v3.3.0-BETA1

Set version to 3.3.0-BETA1

EnrichmentMap 3.2.1

Minor features and bug fixes.

• The Heat Map panel is now synchronized with the data set list in the Control Panel. When a data set is disabled the genes/expressions from that data set will be hidden in the Heat Map. This is consistent with how the data set list interacts with the network. (#313)
• Added better documentation for commands (accessible via command line or swagger) (#373).
• Added 'pattern' argument to mastermap command. (#374)
• Bug fixes (#376, #323, etc...)

v3.2.1-RC2

Set version to 3.2.1-RC2

v3.2.1-RC1

Set version to 3.2.1-RC1

EnrichmentMap 3.2

• Integration with other tools
  • GeneMANIA
  • STRING
  • Pathway Commons
• New Commands
  • export pdf
  • set chart options
  • show/hide datasets
  • create EM from data in a table (allows EM to be created from STRING)
• New Column name prefixes (EnrichmentMap::name)
  • Uses new Column Namespace feature introduced in Cytoscape 3.7
• Scroll bar in main panel
• Empty ranks always sorted to bottom of heat map
• Drag and drop files onto the creation dialog
• Many bug fixes
• Requires Cytoscape 3.7

v3.2.0-RC1

Set version to 3.2.0-RC1

v3.2.0-BETA2

Set version to 3.2.0-BETA2