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Hoist simulated controllers from bluesky_training #904

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merged 4 commits into from
Jan 8, 2024

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@prjemian prjemian commented Jan 3, 2024

@prjemian prjemian added this to the 1.6.18 milestone Jan 3, 2024
@prjemian prjemian self-assigned this Jan 3, 2024
@prjemian prjemian marked this pull request as ready for review January 8, 2024 21:18
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prjemian commented Jan 8, 2024

CI failed in code not related to this PR. Here is the Py3.11 log with the fail

2024-01-08T21:23:21.2348097Z apstools/plans/tests/test_alignment.py::test_lineup2[signals4-mover4--1.2-1.2-11-max-2] FAILED [ 48%]
2024-01-08T21:23:21.2349107Z 
2024-01-08T21:23:21.2349402Z =================================== FAILURES ===================================
2024-01-08T21:23:21.2350418Z _______________ test_lineup2[signals4-mover4--1.2-1.2-11-max-2] ________________
2024-01-08T21:23:21.2352695Z 
2024-01-08T21:23:21.2354570Z signals = [SynPseudoVoigt(name='pvoigt', value=5, timestamp=1704748988.992658), EpicsSignalRO(read_pv='gp:userCalc1.VAL', name='..., 'channels.chan06.gate', 'count_mode', 'delay', 'auto_count_delay', 'freq', 'preset_time', 'auto_count_time', 'egu'])]
2024-01-08T21:23:21.2358614Z mover = EpicsSignal(read_pv='gp:gp:float1', name='axis', value=0.0, timestamp=1704748999.251151, tolerance=0.0001, auto_monitor=True, string=False, write_pv='gp:gp:float1', limits=False, put_complete=False)
2024-01-08T21:23:21.2360720Z start = -1.2, finish = 1.2, npts = 11, feature = 'max', nscans = 2
2024-01-08T21:23:21.2368328Z 
2024-01-08T21:23:21.2372382Z     @pytest.mark.parametrize(
2024-01-08T21:23:21.2377464Z         "signals, mover, start, finish, npts, feature, nscans",
2024-01-08T21:23:21.2378157Z         [
2024-01-08T21:23:21.2378841Z             [noisy, m1, -1.2, 1.2, 11, "max", 2],  # slower, is motor
2024-01-08T21:23:21.2379855Z             [pvoigt, axis, -1.2, 1.2, 11, "cen", 2],  # faster, is ao (float)
2024-01-08T21:23:21.2380802Z             [pvoigt, axis, -1.2, 1.2, 11, "max", 2],
2024-01-08T21:23:21.2381613Z             [[pvoigt], axis, -1.2, 1.2, 11, "max", 2],  # list
2024-01-08T21:23:21.2382714Z             [[pvoigt, noisy, scaler1], axis, -1.2, 1.2, 11, "max", 2],  # more than one detector
2024-01-08T21:23:21.2383817Z             [(pvoigt), axis, -1.2, 1.2, 11, "max", 2],  # tuple
2024-01-08T21:23:21.2388122Z             [pvoigt, axis, -1.2, 1.2, 11, "cen", 1],
2024-01-08T21:23:21.2388865Z             [pvoigt, axis, -1.2, 1.2, 11, "com", 1],
2024-01-08T21:23:21.2389598Z             [pvoigt, axis, -1.2, 1.2, 11, "max", 1],
2024-01-08T21:23:21.2390434Z             [pvoigt, axis, -1.2, 1.2, 11, "min", 1],  # pathological
2024-01-08T21:23:21.2391097Z         ],
2024-01-08T21:23:21.2391430Z     )
2024-01-08T21:23:21.2392046Z     def test_lineup2(signals, mover, start, finish, npts, feature, nscans):
2024-01-08T21:23:21.2392922Z         if isinstance(signals, SynPseudoVoigt):
2024-01-08T21:23:21.2393756Z             signals.randomize_parameters(scale=250_000, bkg=0.000_000_000_1)
2024-01-08T21:23:21.2394479Z         else:
2024-01-08T21:23:21.2394867Z             change_noisy_parameters()
2024-01-08T21:23:21.2395369Z     
2024-01-08T21:23:21.2395712Z         RE(bps.mv(mover, 0))
2024-01-08T21:23:21.2396229Z         assert get_position(mover) == 0.0
2024-01-08T21:23:21.2396759Z     
2024-01-08T21:23:21.2397506Z >       RE(alignment.lineup2(signals, mover, start, finish, npts, feature=feature, nscans=nscans))
2024-01-08T21:23:21.2398304Z 
2024-01-08T21:23:21.2398868Z /home/runner/work/apstools/apstools/apstools/plans/tests/test_alignment.py:196: 
2024-01-08T21:23:21.2399970Z _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
2024-01-08T21:23:21.2401468Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/run_engine.py:903: in __call__
2024-01-08T21:23:21.2402913Z     plan_return = self._resume_task(init_func=_build_task)
2024-01-08T21:23:21.2405237Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/run_engine.py:1042: in _resume_task
2024-01-08T21:23:21.2406580Z     raise exc
2024-01-08T21:23:21.2408031Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/run_engine.py:1672: in _run
2024-01-08T21:23:21.2409310Z     raise err
2024-01-08T21:23:21.2410614Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/run_engine.py:1532: in _run
2024-01-08T21:23:21.2412016Z     msg = self._plan_stack[-1].send(resp)
2024-01-08T21:23:21.2412996Z /home/runner/work/apstools/apstools/apstools/plans/alignment.py:357: in lineup2
2024-01-08T21:23:21.2414016Z     yield from _inner()  # Run the scan.
2024-01-08T21:23:21.2415575Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/utils/__init__.py:1203: in dec_inner
2024-01-08T21:23:21.2416933Z     return (yield from plan)
2024-01-08T21:23:21.2418436Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:408: in subs_wrapper
2024-01-08T21:23:21.2419940Z     return (yield from finalize_wrapper(_inner_plan(),
2024-01-08T21:23:21.2421899Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:535: in finalize_wrapper
2024-01-08T21:23:21.2423337Z     ret = yield from plan
2024-01-08T21:23:21.2424808Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:406: in _inner_plan
2024-01-08T21:23:21.2426182Z     return (yield from plan)
2024-01-08T21:23:21.2427062Z /home/runner/work/apstools/apstools/apstools/plans/alignment.py:354: in _inner
2024-01-08T21:23:21.2428324Z     yield from bp.rel_scan(detectors, mover, rel_start, rel_end, points, md=_md)
2024-01-08T21:23:21.2430085Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/plans.py:1410: in rel_scan
2024-01-08T21:23:21.2431417Z     return (yield from inner_rel_scan())
2024-01-08T21:23:21.2432977Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/utils/__init__.py:1203: in dec_inner
2024-01-08T21:23:21.2434343Z     return (yield from plan)
2024-01-08T21:23:21.2435969Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:1163: in reset_positions_wrapper
2024-01-08T21:23:21.2437687Z     return (yield from finalize_wrapper(plan_mutator(plan, insert_reads),
2024-01-08T21:23:21.2439522Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:535: in finalize_wrapper
2024-01-08T21:23:21.2440942Z     ret = yield from plan
2024-01-08T21:23:21.2442410Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:173: in plan_mutator
2024-01-08T21:23:21.2443769Z     raise ex
2024-01-08T21:23:21.2445335Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:126: in plan_mutator
2024-01-08T21:23:21.2446816Z     msg = plan_stack[-1].send(ret)
2024-01-08T21:23:21.2448316Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/utils/__init__.py:1203: in dec_inner
2024-01-08T21:23:21.2449681Z     return (yield from plan)
2024-01-08T21:23:21.2451265Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:1119: in relative_set_wrapper
2024-01-08T21:23:21.2452723Z     return (yield from plan)
2024-01-08T21:23:21.2454206Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:263: in msg_mutator
2024-01-08T21:23:21.2455567Z     msg = plan.send(_s)
2024-01-08T21:23:21.2457023Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:173: in plan_mutator
2024-01-08T21:23:21.2458733Z     raise ex
2024-01-08T21:23:21.2460146Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:126: in plan_mutator
2024-01-08T21:23:21.2461610Z     msg = plan_stack[-1].send(ret)
2024-01-08T21:23:21.2463069Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/plans.py:1407: in inner_rel_scan
2024-01-08T21:23:21.2464497Z     return (yield from scan(detectors, *args, num=num,
2024-01-08T21:23:21.2466018Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/plans.py:1120: in scan
2024-01-08T21:23:21.2467374Z     return (yield from scan_nd(detectors, full_cycler,
2024-01-08T21:23:21.2468914Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/plans.py:1015: in scan_nd
2024-01-08T21:23:21.2470208Z     return (yield from inner_scan_nd())
2024-01-08T21:23:21.2471751Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/utils/__init__.py:1203: in dec_inner
2024-01-08T21:23:21.2473019Z     return (yield from plan)
2024-01-08T21:23:21.2474405Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:985: in stage_wrapper
2024-01-08T21:23:21.2475876Z     return (yield from finalize_wrapper(inner(), unstage_devices()))
2024-01-08T21:23:21.2477926Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:535: in finalize_wrapper
2024-01-08T21:23:21.2479360Z     ret = yield from plan
2024-01-08T21:23:21.2480852Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:983: in inner
2024-01-08T21:23:21.2482245Z     return (yield from plan)
2024-01-08T21:23:21.2483855Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/utils/__init__.py:1203: in dec_inner
2024-01-08T21:23:21.2485453Z     return (yield from plan)
2024-01-08T21:23:21.2486990Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:351: in run_wrapper
2024-01-08T21:23:21.2488455Z     yield from contingency_wrapper(plan,
2024-01-08T21:23:21.2490263Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:625: in contingency_wrapper
2024-01-08T21:23:21.2491768Z     yield from else_plan()
2024-01-08T21:23:21.2493264Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/plan_stubs.py:984: in close_run
2024-01-08T21:23:21.2494973Z     return (yield Msg('close_run', exit_status=exit_status, reason=reason))
2024-01-08T21:23:21.2496770Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:198: in plan_mutator
2024-01-08T21:23:21.2498157Z     inner_ret = yield msg
2024-01-08T21:23:21.2499639Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:251: in msg_mutator
2024-01-08T21:23:21.2501014Z     _s = yield msg
2024-01-08T21:23:21.2502463Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/preprocessors.py:198: in plan_mutator
2024-01-08T21:23:21.2503852Z     inner_ret = yield msg
2024-01-08T21:23:21.2505241Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/run_engine.py:1592: in _run
2024-01-08T21:23:21.2506553Z     new_response = await coro(msg)
2024-01-08T21:23:21.2508042Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/run_engine.py:1809: in _close_run
2024-01-08T21:23:21.2509457Z     ret = (await current_run.close_run(msg))
2024-01-08T21:23:21.2510978Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/bundlers.py:131: in close_run
2024-01-08T21:23:21.2512370Z     await self.emit(DocumentNames.stop, doc)
2024-01-08T21:23:21.2514305Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/run_engine.py:2529: in emit
2024-01-08T21:23:21.2515628Z     self.emit_sync(name, doc)
2024-01-08T21:23:21.2517071Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/run_engine.py:2526: in emit_sync
2024-01-08T21:23:21.2518456Z     self.dispatcher.process(name, doc)
2024-01-08T21:23:21.2520000Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/run_engine.py:2549: in process
2024-01-08T21:23:21.2521541Z     exceptions = self.cb_registry.process(name, name.name, doc)
2024-01-08T21:23:21.2523268Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/utils/__init__.py:385: in process
2024-01-08T21:23:21.2524614Z     func(*args, **kwargs)
2024-01-08T21:23:21.2526253Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/bluesky/utils/__init__.py:474: in __call__
2024-01-08T21:23:21.2527555Z     return mtd(*args, **kwargs)
2024-01-08T21:23:21.2528539Z /home/runner/work/apstools/apstools/apstools/callbacks/scan_signal_statistics.py:148: in receiver
2024-01-08T21:23:21.2529546Z     getattr(self, key)(document)
2024-01-08T21:23:21.2530462Z /home/runner/work/apstools/apstools/apstools/callbacks/scan_signal_statistics.py:199: in stop
2024-01-08T21:23:21.2531526Z     self.report()
2024-01-08T21:23:21.2532788Z /home/runner/work/apstools/apstools/apstools/callbacks/scan_signal_statistics.py:165: in report
2024-01-08T21:23:21.2533880Z     v = getattr(stats, k)
2024-01-08T21:23:21.2534463Z _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
2024-01-08T21:23:21.2535018Z 
2024-01-08T21:23:21.2536762Z self = SummationRegisters(X=8.881784197001252e-16, XX=6.336, XXY=2475.2467216127584, XY=1.1368683772161603e-13, Y=4297.303336...946638440411, slope=-3.6820145648547125e-14, stddev_x=0.795989949685296, stddev_y=None, x_at_max_y=1.2, x_at_min_y=1.2)
2024-01-08T21:23:21.2538427Z 
2024-01-08T21:23:21.2538585Z     @property
2024-01-08T21:23:21.2538945Z     def stddev_y(self):
2024-01-08T21:23:21.2539329Z         r"""
2024-01-08T21:23:21.2539741Z         Standard deviation of :math:`y` values.
2024-01-08T21:23:21.2540269Z     
2024-01-08T21:23:21.2540885Z         .. math:: \sigma_y^2 = {{\sum{y^2} - \bar{y}\sum{y}} \over {n-1}}
2024-01-08T21:23:21.2541535Z         """
2024-01-08T21:23:21.2542165Z >       return math.sqrt((self.YY - self.mean_y * self.Y) / (self.n - 1))
2024-01-08T21:23:21.2542882Z E       ValueError: math domain error
2024-01-08T21:23:21.2543245Z 
2024-01-08T21:23:21.2544215Z /home/runner/micromamba/envs/anaconda-test-env-py-3.11/lib/python3.11/site-packages/pysumreg/sum_registers.py:192: ValueError
2024-01-08T21:23:21.2545624Z ----------------------------- Captured stdout call -----------------------------

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prjemian commented Jan 8, 2024

Still the CI workflow did not fail, only the pytest.

@prjemian prjemian merged commit e5231a4 into main Jan 8, 2024
11 of 13 checks passed
@prjemian prjemian deleted the 897-temperature-sims branch January 8, 2024 21:53
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Hoist simulated temperature controller code from bluesky_training
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