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CI #905 format them YAML files
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@prjemian
prjemian committed Feb 26, 2024
1 parent f64da58 commit ead6317
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235 changes: 117 additions & 118 deletions .github/workflows/code.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -8,14 +8,13 @@ on:
pull_request:
branches:
- main
workflow_dispatch: # allow manual triggering
workflow_dispatch: # allow manual triggering

defaults:
run:
shell: bash -l {0}

jobs:

lint:
name: Code style
runs-on: ubuntu-latest
Expand All @@ -25,7 +24,7 @@ jobs:

- uses: actions/setup-python@v5
with:
python-version: '3.11'
python-version: "3.11"

- name: Install Dependencies
run: |
Expand Down Expand Up @@ -57,7 +56,7 @@ jobs:

- uses: actions/setup-python@v4
with:
python-version: '3.11'
python-version: "3.11"

- name: Create Python ${{ matrix.python-version }} environment
uses: mamba-org/setup-micromamba@v1
Expand Down Expand Up @@ -111,120 +110,120 @@ jobs:
max-parallel: 5

steps:
- uses: actions/checkout@v4

- name: Create Python ${{ matrix.python-version }} environment
uses: mamba-org/setup-micromamba@v1
with:
cache-environment: true
cache-environment-key: env-key-${{ matrix.python-version }}
condarc: |
channel-priority: flexible
environment-file: environment.yml
environment-name: anaconda-test-env-py-${{ matrix.python-version }}
create-args: >-
coveralls
pytest
pytest-cov
python=${{ matrix.python-version }}
setuptools-scm
- name: Initial diagnostics
run: |
set -vxeuo pipefail
micromamba info
micromamba list
conda config --show-sources
conda config --show
micromamba env list
printenv | sort
- name: Directories before Docker
run: ls -lAFghrt ~/

- name: Start EPICS IOCs in Docker
run: |
set -vxeuo pipefail
bash ./.github/scripts/iocmgr.sh start GP gp
bash ./.github/scripts/iocmgr.sh start ADSIM ad
docker ps -a
ls -lAFgh /tmp/docker_ioc/iocad/
ls -lAFgh /tmp/docker_ioc/iocgp/
- name: Directories after Docker
run: ls -lAFghrt ~/

- name: Confirm EPICS IOC is available via caget
shell: bash -l {0}
run: |
set -vxeuo pipefail
docker exec iocgp grep float1 /home/iocgp/dbl-all.txt
docker exec iocgp /opt/base/bin/linux-x86_64/caget gp:UPTIME gp:gp:float1
docker exec iocad /opt/base/bin/linux-x86_64/caget ad:cam1:Acquire_RBV
which caget
caget gp:UPTIME
caget gp:gp:float1
caget ad:cam1:Acquire_RBV
- name: Confirm EPICS IOC is available via PyEpics
shell: bash -l {0}
run: |
python -c "import epics; print(epics.caget('gp:UPTIME'))"
- name: Confirm EPICS IOC is available via ophyd
shell: bash -l {0}
run: |
CMD="import ophyd"
CMD+="; up = ophyd.EpicsSignalRO('gp:UPTIME', name='up')"
CMD+="; pv = ophyd.EpicsSignalRO('gp:gp:float1', name='pv')"
CMD+="; up.wait_for_connection()"
CMD+="; print(up.get(), pv.get())"
python -c "${CMD}"
- name: Download catalog artifacts
uses: actions/download-artifact@v3
with:
name: databroker_catalogs
path: ~/databroker_catalogs

- name: Restore archival content
run: |
set -vxeuo pipefail
mkdir -p ~/.local/share/intake
mv ~/databroker_catalogs/.local/share/intake/* ~/.local/share/intake
mv ~/databroker_catalogs/*_test /tmp/
- name: Diagnostics
shell: bash -l {0}
run: |
set -vxeuo pipefail
df -HT
micromamba list
- name: Test catalog length, expect 53
shell: bash -l {0}
run: python -c "import databroker; print(len(databroker.catalog['apstools_test']))"

- name: Run tests with pytest & coverage
shell: bash -l {0}
run: |
set -vxeuo pipefail
coverage run --concurrency=thread --parallel-mode -m pytest -vvv --exitfirst .
coverage combine
coverage report --precision 3
- name: Upload coverage data to coveralls.io
shell: bash -l {0}
run: |
set -vxeuo pipefail
micromamba list coveralls
which coveralls
coveralls debug
coveralls --service=github
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_FLAG_NAME: ${{ matrix.python-version }}
COVERALLS_PARALLEL: true
- uses: actions/checkout@v4

- name: Create Python ${{ matrix.python-version }} environment
uses: mamba-org/setup-micromamba@v1
with:
cache-environment: true
cache-environment-key: env-key-${{ matrix.python-version }}
condarc: |
channel-priority: flexible
environment-file: environment.yml
environment-name: anaconda-test-env-py-${{ matrix.python-version }}
create-args: >-
coveralls
pytest
pytest-cov
python=${{ matrix.python-version }}
setuptools-scm
- name: Initial diagnostics
run: |
set -vxeuo pipefail
micromamba info
micromamba list
conda config --show-sources
conda config --show
micromamba env list
printenv | sort
- name: Directories before Docker
run: ls -lAFghrt ~/

- name: Start EPICS IOCs in Docker
run: |
set -vxeuo pipefail
bash ./.github/scripts/iocmgr.sh start GP gp
bash ./.github/scripts/iocmgr.sh start ADSIM ad
docker ps -a
ls -lAFgh /tmp/docker_ioc/iocad/
ls -lAFgh /tmp/docker_ioc/iocgp/
- name: Directories after Docker
run: ls -lAFghrt ~/

- name: Confirm EPICS IOC is available via caget
shell: bash -l {0}
run: |
set -vxeuo pipefail
docker exec iocgp grep float1 /home/iocgp/dbl-all.txt
docker exec iocgp /opt/base/bin/linux-x86_64/caget gp:UPTIME gp:gp:float1
docker exec iocad /opt/base/bin/linux-x86_64/caget ad:cam1:Acquire_RBV
which caget
caget gp:UPTIME
caget gp:gp:float1
caget ad:cam1:Acquire_RBV
- name: Confirm EPICS IOC is available via PyEpics
shell: bash -l {0}
run: |
python -c "import epics; print(epics.caget('gp:UPTIME'))"
- name: Confirm EPICS IOC is available via ophyd
shell: bash -l {0}
run: |
CMD="import ophyd"
CMD+="; up = ophyd.EpicsSignalRO('gp:UPTIME', name='up')"
CMD+="; pv = ophyd.EpicsSignalRO('gp:gp:float1', name='pv')"
CMD+="; up.wait_for_connection()"
CMD+="; print(up.get(), pv.get())"
python -c "${CMD}"
- name: Download catalog artifacts
uses: actions/download-artifact@v3
with:
name: databroker_catalogs
path: ~/databroker_catalogs

- name: Restore archival content
run: |
set -vxeuo pipefail
mkdir -p ~/.local/share/intake
mv ~/databroker_catalogs/.local/share/intake/* ~/.local/share/intake
mv ~/databroker_catalogs/*_test /tmp/
- name: Diagnostics
shell: bash -l {0}
run: |
set -vxeuo pipefail
df -HT
micromamba list
- name: Test catalog length, expect 53
shell: bash -l {0}
run: python -c "import databroker; print(len(databroker.catalog['apstools_test']))"

- name: Run tests with pytest & coverage
shell: bash -l {0}
run: |
set -vxeuo pipefail
coverage run --concurrency=thread --parallel-mode -m pytest -vvv --exitfirst .
coverage combine
coverage report --precision 3
- name: Upload coverage data to coveralls.io
shell: bash -l {0}
run: |
set -vxeuo pipefail
micromamba list coveralls
which coveralls
coveralls debug
coveralls --service=github
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_FLAG_NAME: ${{ matrix.python-version }}
COVERALLS_PARALLEL: true

# https://coveralls-python.readthedocs.io/en/latest/usage/configuration.html#github-actions-support
coveralls:
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