Merge pull request #25 from mughetto/main

Updating local build reqs
AstraZeneca · Aug 16, 2023 · 1c1c1d0 · 1c1c1d0
2 parents 6247eb4 + b1a3d21
commit 1c1c1d0
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Showing 6 changed files with 13 additions and 9 deletions.
diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml
@@ -16,11 +16,11 @@ jobs:
       - uses: actions/checkout@v2
       - uses: actions/setup-python@v1
         with:
-          python-version: 3.8.12
+          python-version: 3.9.17
       - uses: s-weigand/setup-conda@v1
         with:
           activate-conda: true
-          python-version: 3.8
+          python-version: 3.9
       - run: conda --version
       - run: which python
       - name: Run installation.

diff --git a/docs/requirements_1.txt b/docs/requirements_1.txt
@@ -15,3 +15,8 @@ markupsafe==2.0.1
 nbconvert
 sphinxcontrib-pseudocode
 Jinja2==3.0.0
+dataclasses-json
+networkx
+pandas-profiling
+plotly
+great_expectations
diff --git a/onto_merger/data/data_manager.py b/onto_merger/data/data_manager.py
@@ -202,7 +202,7 @@ def load_specified_tables(self, table_names: List[str]) -> List[NamedTable]:
     def load_analysis_report_table_as_dict(self,
                                            section_name: str,
                                            table_name: str,
-                                           rename_columns: dict = None) -> List[dict]:
+                                           rename_columns: Union[None, dict[str, str]] = None) -> List[dict]:
         """Load a CSV table as a list of dictionaries.
 
         :param section_name: The name of the report section (prefix of the file).
@@ -254,7 +254,7 @@ def save_table(
         logger.info(f"Saving table '{f'{table.name}.csv'}' with {len(table.dataframe):,d} " + f"row(s) to {file_path}.")
         table.dataframe.to_csv(file_path, index=False)
 
-    def save_tables(self, tables: List[NamedTable], process_directory: str = None) -> None:
+    def save_tables(self, tables: List[NamedTable], process_directory: Union[None, str] = None) -> None:
         """Save a list of named tables Pandas dataframe part as CSVs.
 
         :param tables: The tables to be saved.

diff --git a/readthedocs.yaml b/readthedocs.yaml
@@ -12,10 +12,8 @@ formats:
    - htmlzip
 
 python:
-   version: "3.8"
-   system_packages: "True"
+   version: "3.9"
    install:
       - requirements: docs/requirements_1.txt
       - method: setuptools
         path: .
-   system_packages: true
diff --git a/requirements.txt b/requirements.txt
@@ -1,5 +1,5 @@
 pandas==1.3.5
-pandas-profiling==3.1.0
+pandas-profiling==3.6.6
 dataclasses-json==0.5.7
 great_expectations==0.15.2
 jinja2==3.0.3

diff --git a/setup.cfg b/setup.cfg
@@ -12,7 +12,8 @@ long_description_content_type = text/markdown
 ignore =
     E203,
     W503,
-    BLK100
+    BLK100,
+    B023
 exclude =
     .tox,
     .git,