Merge pull request #6 from JAlvarezJarreta/bufixes

Bufixes
Asrst · Oct 19, 2023 · 58727d9 · 58727d9
2 parents 1ab6d3a + 88adb89
commit 58727d9
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Showing 2 changed files with 3 additions and 4 deletions.
diff --git a/scripts/get_taxon_flat.py b/scripts/get_taxon_flat.py
@@ -8,7 +8,7 @@
 pymysql.install_as_MySQLdb()
 
 
-def get_taxon_ids(url):
+def get_taxon_ids(species_url: str = "https://metazoa.ensembl.org/species.html"):
     """
     The function scrapes the metazoa taxonomy ids data
     from a fixed url: https://metazoa.ensembl.org/species.html
@@ -19,7 +19,6 @@ def get_taxon_ids(url):
 
     """
 
-    species_url = "https://metazoa.ensembl.org/species.html"
     response = requests.get(species_url)
     soup = BeautifulSoup(response.text, "lxml")
 

diff --git a/src/taxon_search/views.py b/src/taxon_search/views.py
@@ -35,8 +35,8 @@ def index(request):
         # call the elastic search function in search.py
         search_results = search_species(q)
 
-        name_class = [d["name_class"] for d in search_results][0]
-        rank = [d["rank"] for d in search_results][0]
+        name_class = [d["name_class"] for d in search_results][0] if search_results else ""
+        rank = [d["rank"] for d in search_results][0] if search_results else ""
 
         matched_species = set([d["species_taxon_id"] for d in search_results])
         species_names = EnsemblMetadata.objects.filter(taxonomy_id__in=matched_species)