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AnnabelLarge.github.io
AnnabelLarge.github.io PublicForked from academicpages/academicpages.github.io
Personal website
JavaScript
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seq2seq-toy-model
seq2seq-toy-model PublicToy models for a simple seq2seq task. Two versions of the codebase include: 1.) pure pytorch, and 2.) pytorch dataloaders with flax/jax framework
Python
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EvolPairHMMore
EvolPairHMMore PublicCalculating protein pair alignment probabilities with various substitution and indel models. Implemented in Jax with Pytorch dataloaders. Training data from Pfam pair alignments. See https://github…
Python
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installing-tensorflow-and-jax
installing-tensorflow-and-jax PublicYet another step-by-step for how to install Tensorflow on Linux, followed by an installation of Jax using Pytorch Dataloaders.
Python
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AAV-regression-in-Jax
AAV-regression-in-Jax PublicPrediction of AAV capsid fitness from VP1 protein sequence; written in Jax with PyTorch dataloaders
Python
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