ENH: Add ITK helpers for streaming SmartSPIM subimages #4
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thewtex
approved these changes
Aug 18, 2023
Changes: - Adds helper scripts in `image.py` and `smartspim.py` for retrieving SmartSPIM physical metadata and translating between physical and voxel domains - Adds example `StreamSmartSPIM.ipynb` notebook describing how to stream SmartSPIM data with ITK tools - Moves image methods from `registration_methods.py` to `image.py`
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Squashed fixups. |
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Moving forward with merge to support related development. |
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Provides scripts and demonstrates procedure for working with SmartSPIM images in ITK:
OME-Zarrstandard header andacquisition.jsonbespoke headerCode changes:
image.pyandsmartspim.pyfor retrieving SmartSPIM physical metadata and translating between physical and voxel domainsStreamSmartSPIM.ipynbnotebook describing procedure for streaming SmartSPIM images with ITK tools