Merge pull request #586 from AllenInstitute/alexpiet-patch-1

Update README.md

README.md

@@ -1,5 +1,5 @@
 # visual_behavior_glm
-Fits a kernel regression model to df/f traces during visual behavior. 
+Fits a kernel regression model to neural traces during visual behavior. 
 
 # Installing and setting up the package
 
@@ -41,20 +41,3 @@ Test that the package was installed properly by importing the GLM class from out
     >>> from visual_behavior_glm.glm import GLM
 
 Please report issues at https://github.com/AllenInstitute/visual_behavior_glm/issues
-
-# Use
-
-## Defining new kernels/regressors
-- Adding a new kernel requires changes in two places.
-- Add the kernel parameters to `make_run_json()` as a dictionary with keys `length` and `offset`
-- Define the event times in `add_kernel_by_label()`
-
-## Fit the model
-- Make the run json using `delete_rebuild_run_json.py` in  `scripts` with `python delete_rebuild_run_json.py --version <version> --label <a descriptive label> --src-path <path_to_source_code>`
-- Start the run for a single session with `python scripts/fit_glm.py --oied <ophys_experiment_id> --version <version>`
-- Start the run for all sessions at the command line on hpc-login with `python scripts/deploy_fits.py --glm-version <version> --env <name_of_conda_environment>`
-- Collect the results across sessions using `retrieve_results(glm_version=<version>)` from `src/GLM_analysis_tools.py`
-
-## Model Iteration System
-- `delete_rebuild_run_json.py` saves a copy of current files, as well as a JSON file with run parameters to `../nc-ophys/visual_behavior/ophys_glm/v_<version>/`
-