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Merge branch 'development' into job_info_check
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zingale authored Apr 2, 2024
2 parents 7269f6d + 4956d32 commit cba2a25
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17 changes: 17 additions & 0 deletions CHANGES.md
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# 24.04

* Some clang-tidy fixes (#2779, #2780, #2781, #2784, #2786, #2787, #2790,
#2791, #2792, #2793, #2797, #2798, #2799, #2800, #2801, #2804)

* Fix species initialization in the Detonation problem (#2806)
and let it work with NSE (#2765)

* Sync up with AMReX changes (#2794)

* wdmerger now reports composition of initial stars (#2767)

* flame_wave now checks if the `atm_delta` is too small (#2782)
and stores X(ash) (#2773)

* a bounds issue in the true SDC integration was fixed (#2775)

# 24.03

* Documentation updates (#2742, #2752, #2753)
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6 changes: 4 additions & 2 deletions Docs/source/io.rst
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Expand Up @@ -304,6 +304,8 @@ Derived variables
+-----------------------------------+---------------------------------------------------+-----------------------------+-----------------------------------------+
| variable name | description | derive routine | units |
+===================================+===================================================+=============================+=========================================+
| ``abar`` | Mean atomic mass | ``derabar`` | :math:`\amu` |
+-----------------------------------+---------------------------------------------------+-----------------------------+-----------------------------------------+
| ``angular_momentum_x``, | Angular momentum / volume in the x, y, or z dir | ``derangmomx``, | :math:`{\rm g~cm^{-1}~s^{-1}}` |
| ``angular_momentum_y``, | computed as :math:`[(\rho \ub) \times {\bf r}]_n` | ``derangmomy``, | |
| ``angular_momentum_z`` | where :math:`{\bf r}` is the distance from | ``derangmomz`` | |
Expand All @@ -328,6 +330,8 @@ Derived variables
| | :math:`s = s(\rho, e, X_k)`, where `e` is | | |
| | computed from :math:`(\rho e)` | | |
+-----------------------------------+---------------------------------------------------+-----------------------------+-----------------------------------------+
| ``enuc`` | Nuclear energy generation rate / gram | ``derenuc`` | :math:`{\rm erg~g^{-1}~s^{-1}}` |
+-----------------------------------+---------------------------------------------------+-----------------------------+-----------------------------------------+
| ``Ertot`` | Total radiation energy density | ``derertot`` | |
| | (for multigroup radiation problems) | | |
+-----------------------------------+---------------------------------------------------+-----------------------------+-----------------------------------------+
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| ``y_velocity``, | :math:`\ub = (\rho \ub)/\rho` | | |
| ``z_velocity`` | | | |
+-----------------------------------+---------------------------------------------------+-----------------------------+-----------------------------------------+
| ``enuc`` | Nuclear energy generation rate / gram | ``derenuc`` | :math:`{\rm erg~g^{-1}~s^{-1}}` |
+-----------------------------------+---------------------------------------------------+-----------------------------+-----------------------------------------+

problem-specific plotfile variables
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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2 changes: 1 addition & 1 deletion external/Microphysics
Submodule Microphysics updated 69 files
+0 −2 .clang-tidy
+16 −0 .github/workflows/burn_cell_sdc.yml
+14 −0 .github/workflows/nse_net.yml
+10 −0 .zenodo.json
+14 −0 CHANGES.md
+5 −5 EOS/helmholtz/actual_eos.H
+2 −0 README.md
+73 −26 integration/BackwardEuler/actual_integrator.H
+80 −52 integration/BackwardEuler/actual_integrator_sdc.H
+13 −13 integration/BackwardEuler/be_integrator.H
+51 −31 integration/RKC/actual_integrator.H
+56 −45 integration/RKC/actual_integrator_sdc.H
+15 −14 integration/VODE/actual_integrator.H
+7 −5 integration/VODE/actual_integrator_sdc.H
+6 −4 integration/VODE/vode_dvode.H
+3 −3 integration/integrator_data.H
+2 −3 integration/nse_update_sdc.H
+2 −2 interfaces/burn_type.H
+1 −1 interfaces/eos_type.H
+ networks/CNO_extras/cno_extras.png
+ networks/CNO_extras/cno_extras_hide_alpha.png
+1 −1 networks/CNO_extras/partition_functions.H
+1 −1 networks/ECSN/partition_functions.H
+ networks/He-C-Fe-group/He-C-Fe-group.png
+1 −1 networks/He-C-Fe-group/partition_functions.H
+ networks/ase/ase.png
+1 −1 networks/ase/partition_functions.H
+33 −24 networks/general_null/network_header.template
+0 −87 networks/general_null/network_properties.template
+1 −1 networks/ignition_reaclib/C-burn-simple/partition_functions.H
+1 −1 networks/ignition_reaclib/URCA-medium/partition_functions.H
+ networks/ignition_reaclib/URCA-medium/urca_medium.png
+1 −1 networks/ignition_reaclib/URCA-simple/partition_functions.H
+ networks/nova/nova.png
+1 −1 networks/nova/partition_functions.H
+ networks/nova2/nova.png
+1 −1 networks/nova2/partition_functions.H
+1 −1 networks/partition_test/partition_functions.H
+17 −27 networks/rhs.H
+1 −1 networks/sn160/partition_functions.H
+1 −1 networks/subch_approx/partition_functions.H
+ networks/subch_approx/subch_approx.png
+1 −1 networks/subch_base/partition_functions.H
+ networks/subch_base/subch_base.png
+1 −1 networks/subch_full/partition_functions.H
+ networks/subch_full/subch_full.png
+1 −1 networks/subch_simple/partition_functions.H
+ networks/subch_simple/subch_simple.png
+4 −4 neutrinos/sneut5.H
+395 −901 nse_solver/nse_check.H
+297 −251 nse_solver/nse_solver.H
+10 −8 nse_tabular/nse_table.H
+130 −84 sphinx_docs/source/nse.rst
+4 −4 sphinx_docs/source/sdc.rst
+13 −12 unit_test/burn_cell/ci-benchmarks/chamulak_VODE_unit_test.out
+13 −0 unit_test/burn_cell_sdc/ci-benchmarks/aprox19_RKC_state_over_time.txt
+355 −0 unit_test/test_ase/make_table/ci-benchmarks/ase_nse_net_make_table_unit_test.out
+84 −0 unit_test/test_linear_algebra/test_linear_algebra.H
+43 −0 unit_test/test_screening_templated/GNUmakefile
+7 −0 unit_test/test_screening_templated/Make.package
+5 −0 unit_test/test_screening_templated/README
+11 −0 unit_test/test_screening_templated/_parameters
+9 −0 unit_test/test_screening_templated/inputs
+164 −0 unit_test/test_screening_templated/main.cpp
+151 −0 unit_test/test_screening_templated/screening_util.cpp
+14 −0 unit_test/test_screening_templated/test_screen.H
+44 −0 unit_test/test_screening_templated/variables.H
+80 −0 unit_test/test_screening_templated/variables.cpp
+91 −13 util/microphysics_sort.H
2 changes: 1 addition & 1 deletion external/amrex
Submodule amrex updated 283 files

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