Extract cubewrite fill value modifications
#98
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| # Run CI tests | |
| name: CI | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the master branch | |
| push: | |
| branches: [ main, develop ] | |
| pull_request: | |
| branches: [ main, develop ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| env: | |
| PY_VERSION: "3.10" | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| conda-build: | |
| name: Conda Build | |
| runs-on: ubuntu-latest | |
| env: | |
| NAME: test-${{ github.event.repository.name }} | |
| outputs: | |
| artifact-name: ${{ env.NAME }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup conda environment | |
| uses: conda-incubator/setup-miniconda@11b562958363ec5770fef326fe8ef0366f8cbf8a # v3.0.1 | |
| with: | |
| miniconda-version: "latest" | |
| python-version: ${{ env.PY_VERSION }} | |
| environment-file: conda/environment.yml | |
| auto-update-conda: false | |
| auto-activate-base: false | |
| show-channel-urls: true | |
| - name: Run conda build | |
| shell: bash -el {0} | |
| run: | | |
| conda build . --no-anaconda-upload --output-folder=./build | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ env.NAME }} | |
| if-no-files-found: error | |
| path: ./build | |
| tests: | |
| name: Tests | |
| runs-on: ubuntu-latest | |
| needs: conda-build | |
| # Run the job for different versions of python | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| env: | |
| ARTIFACT_LOCATION: ${{ github.workspace }}/conda-local | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| - name: Checkout code | |
| uses: actions/[email protected] | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: ${{ needs.conda-build.outputs.artifact-name }} | |
| path: ${{ env.ARTIFACT_LOCATION }} | |
| - name: Setup conda environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: conda/environment.yml | |
| activate-environment: um2nc | |
| - name: Install conda package | |
| shell: bash -l {0} | |
| run: | | |
| conda install -c file://${{ env.ARTIFACT_LOCATION }} -c conda-forge -c accessnri -c coecms um2nc | |
| - name: List installed packages | |
| shell: bash -l {0} | |
| run: conda list | |
| - name: Lint | |
| shell: bash -l {0} | |
| run: pylint --extension-pkg-whitelist=netCDF4 --ignored-modules=umpost -E umpost | |
| - name: Entrypoint test of driver script | |
| shell: bash -l {0} | |
| run: esm1p5_convert_nc --help | |
| - name: Entrypoint test of um2netcdf script | |
| shell: bash -l {0} | |
| run: um2nc --help | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: python -m pytest --cov=umpost --cov-report=xml -s test | |
| - name: Upload code coverage | |
| uses: codecov/codecov-action@v4 | |
| # Only upload once for the installed version | |
| if: matrix.python-version == ${{ env.PY_VERSION }} | |
| with: | |
| token: ${{ secrets.codecov_token }} | |
| files: ./coverage.xml |