Copy packages required for OM3 from COSIMA/spack_packages

packages/fms/package.py

@@ -0,0 +1,117 @@
+# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class Fms(CMakePackage):
+    """GFDL's Flexible Modeling System (FMS) is a software environment
+    that supports the efficient development, construction, execution,
+    and scientific interpretation of atmospheric, oceanic, and climate
+    system models."""
+
+    homepage = "https://github.com/NOAA-GFDL/FMS"
+    url = "https://github.com/NOAA-GFDL/FMS/archive/refs/tags/2022.04.tar.gz"
+    git = "https://github.com/NOAA-GFDL/FMS.git"
+
+    maintainers("AlexanderRichert-NOAA", "Hang-Lei-NOAA", "edwardhartnett", "rem1776")
+
+    version("2023.02", sha256="dc029ffadfd82c334f104268bedd8635c77976485f202f0966ae4cf06d2374be")
+    version(
+        "2023.01.01", sha256="f83e2814a1e3ba439ab847ec8bb251f3889d5ca14fb20849507590adbbe8e899"
+    )
+    version("2023.01", sha256="6079ea885e9365513b453c77aadfc7c305bf413b840656bb333db1eabba0f18e")
+    version("2022.04", sha256="f741479128afc2b93ca8291a4c5bcdb024a8cbeda1a26bf77a236c0f629e1b03")
+    version("2022.03", sha256="42d2ac53d3c889a8177a6d7a132583364c0f6e5d5cbde0d980443b6797ad4838")
+    version("2022.02", sha256="ad4978302b219e11b883b2f52519e1ee455137ad947474abb316c8654f72c874")
+    version("2022.01", sha256="a1cba1f536923f5953c28729a28e5431e127b45d6bc2c15d230939f0c02daa9b")
+    version("2021.04", sha256="dcb4fe80cb3b7846f7cf89b812afff09a78a10261ea048a851f28935d6b241b1")
+    version(
+        "2021.03.01", sha256="1f70e2a57f0d01e80fceb9ca9ce9661f5c1565d0437ab67618c2c4dfea0da6e9"
+    )
+    version("2021.03", sha256="a9fb6e85f44ff79e6f9e61e65f42a5ffd38fa661fe1a3e4da6f85ffacd2697ac")
+    version(
+        "2021.02.01", sha256="9b11d9474d7c90464af66d81fb86c4798cfa309b9a0da20b0fccf33c4f65386b"
+    )
+    version("2021.02", sha256="db810b2452a6952239f064b52c0c5c58fc62126057982111b9fcd64f1b3bd879")
+    version("2021.01", sha256="38c748e2edb94ffeb021095d8bde4d74b7834610ce0ef1dbb4dce353eeb5cd96")
+    version(
+        "2020.04.02", sha256="bd6ce752b1018d4418398f14b9fc486f217de76bcbaaf2cdbf4c43e0b3f39f69"
+    )
+    version(
+        "2020.04.01", sha256="2c409242de7dea0cf29f8dbf7495698b6bcac1eeb5c4599a728bdea172ffe37c"
+    )
+
+    variant(
+        "precision",
+        values=("32", "64"),
+        description="Build a version of the library with default 32 or 64 bit reals or both",
+        default="32",
+        multi=True,
+    )
+    conflicts(
+        "precision=32,64",
+        when="@:2022.03",
+        msg="FMS versions prior to 2022.04 do not support both 32 and 64 bit precision",
+    )
+
+    variant("gfs_phys", default=True, description="Use GFS Physics")
+    variant("openmp", default=True, description="Use OpenMP")
+    variant("quad_precision", default=True, description="quad precision reals")
+    variant(
+        "yaml",
+        default=False,
+        description="yaml input file support(requires libyaml)",
+        when="@2021.04:",
+    )
+    variant(
+        "constants",
+        default="GFDL",
+        description="Build with <X> constants parameter definitions",
+        values=("GFDL", "GEOS", "GFS"),
+        multi=False,
+        when="@2022.02:",
+    )
+    variant(
+        "pic", default=False, description="Build with position independent code", when="@2022.02:"
+    )
+    variant(
+        "deprecated_io",
+        default=False,
+        description="Compiles with support for deprecated io modules fms_io and mpp_io",
+        when="@2023.02:",
+    )
+    variant(
+        "large_file", default=False, description="Not sure."
+    )
+    variant(
+        "internal_file_nml", default=False, description="Not sure."
+    )
+
+    depends_on("netcdf-c")
+    depends_on("netcdf-fortran")
+    depends_on("mpi")
+    depends_on("libyaml", when="+yaml")
+
+    def cmake_args(self):
+        args = [
+            self.define_from_variant("GFS_PHYS"),
+            self.define_from_variant("OPENMP"),
+            self.define_from_variant("ENABLE_QUAD_PRECISION", "quad_precision"),
+            self.define_from_variant("WITH_YAML", "yaml"),
+            self.define_from_variant("CONSTANTS"),
+            self.define_from_variant("LARGEFILE", "large_file"),
+            self.define_from_variant("INTERNAL_FILE_NML"),
+            self.define("32BIT", "precision=32" in self.spec),
+            self.define("64BIT", "precision=64" in self.spec),
+            self.define_from_variant("FPIC", "pic"),
+            self.define_from_variant("USE_DEPRECATED_IO", "deprecated_io"),
+        ]
+
+        args.append(self.define("CMAKE_C_COMPILER", self.spec["mpi"].mpicc))
+        args.append(self.define("CMAKE_CXX_COMPILER", self.spec["mpi"].mpicxx))
+        args.append(self.define("CMAKE_Fortran_COMPILER", self.spec["mpi"].mpifc))
+
+        return args

packages/fortranxml/package.py

@@ -0,0 +1,44 @@
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class Fortranxml(AutotoolsPackage):
+    """Fortran XML (FoX) s a library, written entirely in Fortran, designed to allow
+    the easy use of XML from Fortran programs. FoX caters for both XML output
+    and input.
+    """
+
+    homepage = "https://github.com/andreww/fox"
+    git = "https://github.com/andreww/fox.git"
+    url = "https://github.com/andreww/fox/archive/refs/tags/4.1.2.tar.gz"
+
+    maintainers = ["andreww"]
+
+    version("4.1.2", sha256="dea0adc9cc035238fa9cdba42f2bf56481e3a64ac8aa0aece9119f127f71d4e7")
+
+    flag_handler = AutotoolsPackage.build_system_flags
+
+    def install(self, spec, prefix):
+        super(AutotoolsPackage, self).install(spec, prefix)
+
+        pkgconfig_dir = join_path(prefix.lib, "pkgconfig")
+        pkgconfig_file = join_path(pkgconfig_dir, "fox.pc")
+        mkdir(pkgconfig_dir)
+
+        with open(pkgconfig_file, "w", encoding="utf-8") as pc:
+            pc.write(f"""\
+prefix={prefix}
+exec_prefix=${{prefix}}
+libdir=${{exec_prefix}}/lib
+includedir=${{prefix}}/finclude
+
+Name: Fortran XML (FoX)
+Description: A Fortran XML library
+Version: {spec.version}
+Libs: -L${{libdir}} -lFoX_dom -lFoX_sax -lFoX_wcml -lFoX_wkml -lFoX_wxml -lFoX_common -lFoX_utils -lFoX_fsys
+Cflags: -I${{includedir}}
+""")