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NEWS
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catmaid 0.7
===========
This release includes several bug fixes, changes to match the API defined by the
2015.11.16 CATMAID release and support for token-based authentication (see .
* support for CATMAID token-based authentication (#35)
*
catmaid 0.6
===========
* support for upcoming httr 1.0 release
* fix: ensure catmaid connection objects are passed to all downstream functions
e.g. so that you can you use different servers in the same session.
* fix queries that match multiple annotations when using a defined connection
object
* fix: ensure that catmaid_fetch works even if server does not have a terminal /
and remote path is also missing a slash
* fix: servers don't have to be https
catmaid 0.5
===========
This release
* check for http status errors in catmaid (in case there is trouble connecting
to site, bad URL etc)
* ... and errors in returned JSON when request is invalid
* export funcs to get/set login details as environment variables
* ... and clear those env vars (all useful for testing)
catmaid 0.4
===========
This release significantly enhances functionality for querying for neurons by
annotation or name, while also simplifying a number of plotting/analysis tasks
involving connectors (synapses).
* catmaid_query_by_neuronname was renamed to catmaid_query_by_name (since it can
query by both neuron or annotation name as well as returning both annotations
and neurons)
* read.catmaid.neurons has richer attached metadata
(see https://github.com/jefferis/rcatmaid/issues/9)
* read.catmaid.neurons can make simple queries
(see https://github.com/jefferis/rcatmaid/issues/9)
* add catmaid_query_by_annotation to fetch objects tagged with a matching
annotation (rather than searching by object name).
* add connectors to get connector (synapse) information from a neuron
* add catmaid_catmaid_get_connector_table to see a list of incoming/outgoing
connections for a given neuron.
* add plot3d.catmaidneuron to enable convenient plotting of synapses
* fix catmaid_get_neuronnames should return names in the same order as passed
skids (see https://github.com/jefferis/rcatmaid/issues/6)
* the catmaid skeleton_id is consistently referred to as skid in argument names
and return values
* depend on nat (and therefore rgl). Import rather than depend on jsonlite.
* minor doc fixes
catmaid 0.3
===========
* cache login credentials for automatic reuse
* option to set/get environment variables for passwords etc
* Add catmaid_query_connected, catmaid_get_annotationlist, catmaid_query_by_neuronname
* low level catmaid_fetch function covers GET and POST requests