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packages2.7.xml
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packages2.7.xml
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<!-- Package file for v2.7.X packages -->
<!-- NOTE: if you edit this file, DO NOT DELETE any entries. Older package versions -->
<!-- will be available for running BEAST files so that analyses can be replicated -->
<!-- with the package versions used in the original analysis. -->
<packages>
<package name='BEAST.base' version='2.7.0'
url="https://github.com/CompEvol/beast2/releases/download/v2.7.0/BEAST.base.package.v2.7.0.zip"
projectURL="http://beast2.org"
description="BEAST base"/>
<package name='BEAST.app' version='2.7.0'
url="https://github.com/CompEvol/beast2/releases/download/v2.7.0/BEAST.app.package.v2.7.0.zip"
projectURL="http://beast2.org"
description="BEAST base applications">
<depends on='BEAST.base' atleast='2.7.0' atmost='2.7.9'/>
</package>
<package name='BEAST.base' version='2.7.2'
url="https://github.com/CompEvol/beast2/releases/download/2.7.2/BEAST.base.addon.v2.7.2.zip"
projectURL="http://beast2.org"
description="BEAST base"/>
<package name='BEAST.app' version='2.7.2'
url="https://github.com/CompEvol/beast2/releases/download/2.7.2/BEAST.app.addon.v2.7.2.zip"
projectURL="http://beast2.org"
description="BEAST base applications">
<depends on='BEAST.base' atleast='2.7.2' atmost='2.7.9'/>
</package>
<package name='BEAST.base' version='2.7.3'
url="https://github.com/CompEvol/beast2/releases/download/v2.7.3/BEAST.base.addon.v2.7.3.zip"
projectURL="http://beast2.org"
description="BEAST base"/>
<package name='BEAST.app' version='2.7.3'
url="https://github.com/CompEvol/beast2/releases/download/v2.7.3/BEAST.app.addon.v2.7.3.zip"
projectURL="http://beast2.org"
description="BEAST base applications">
<depends on='BEAST.base' atleast='2.7.3' atmost='2.7.9'/>
</package>
<package name='BEAST.base' version='2.7.4'
url="https://github.com/CompEvol/beast2/releases/download/v2.7.4/BEAST.base.package.v2.7.4.zip"
projectURL="http://beast2.org"
description="BEAST base"/>
<package name='BEAST.app' version='2.7.4'
url="https://github.com/CompEvol/beast2/releases/download/v2.7.4/BEAST.app.package.v2.7.4.zip"
projectURL="http://beast2.org"
description="BEAST base applications">
<depends on='BEAST.base' atleast='2.7.4' atmost='2.7.9'/>
</package>
<package name='BEAST.base' version='2.7.5'
url="https://github.com/CompEvol/beast2/releases/download/v2.7.5/BEAST.base.package.v2.7.5.zip"
projectURL="http://beast2.org"
description="BEAST base"/>
<package name='BEAST.app' version='2.7.5'
url="https://github.com/CompEvol/beast2/releases/download/v2.7.5/BEAST.app.package.v2.7.5.zip"
projectURL="http://beast2.org"
description="BEAST base applications">
<depends on='BEAST.base' atleast='2.7.5' atmost='2.7.9'/>
</package>
<package name='BEAST.app' version='2.7.6'
url="https://github.com/CompEvol/beast2/releases/download/v2.7.6/BEAST.app.package.v2.7.6.zip"
projectURL="http://beast2.org"
description="BEAST base applications">
<depends on='BEAST.base' atleast='2.7.6' atmost='2.7.9'/>
</package>
<package name='BEAST.app' version='2.7.7'
url="https://github.com/CompEvol/beast2/releases/download/v2.7.7/BEAST.app.package.v2.7.7.zip"
projectURL="http://beast2.org"
description="BEAST base applications">
<depends on='BEAST.base' atleast='2.7.7' atmost='2.7.9'/>
</package>
<package name='BEAST.base' version='2.7.6'
url="https://github.com/CompEvol/beast2/releases/download/v2.7.6/BEAST.base.package.v2.7.6.zip"
projectURL="http://beast2.org"
description="BEAST base"/>
<package name='BEAST.base' version='2.7.7'
url="https://github.com/CompEvol/beast2/releases/download/v2.7.7/BEAST.base.package.v2.7.7.zip"
projectURL="http://beast2.org"
description="BEAST base"/>
<package name='BEASTLabs' version='2.0.0'
url="https://github.com/BEAST2-Dev/BEASTLabs/releases/download/v2.0.0/BEASTlabs.addon.v2.0.0.zip"
projectURL="https://github.com/BEAST2-Dev/BEASTLabs/"
description="BEAST utilities, such as Script, multi monophyletic constraints">
<depends on='BEAST.base' atleast='2.7.0' atmost='2.7.9'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name='BEASTLabs' version='2.0.1'
url="https://github.com/BEAST2-Dev/BEASTLabs/releases/download/v2.0.0/BEASTlabs.package.v2.0.1.zip"
projectURL="https://github.com/BEAST2-Dev/BEASTLabs/"
description="BEAST utilities, such as Script, multi monophyletic constraints">
<depends on='BEAST.base' atleast='2.7.0' atmost='2.7.9'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name='BEASTLabs' version='2.0.2'
url="https://github.com/BEAST2-Dev/BEASTLabs/releases/download/v2.0.0/BEASTlabs.package.v2.0.2.zip"
projectURL="https://github.com/BEAST2-Dev/BEASTLabs/"
description="BEAST utilities, such as Script, multi monophyletic constraints">
<depends on='BEAST.base' atleast='2.7.0' atmost='2.7.9'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name='bModelTest' version='1.3.0'
url="https://github.com/BEAST2-Dev/bModelTest/releases/download/v1.3.0/bModelTest.addon.v1.3.0.zip"
description="Bayesian model test for nucleotide subst models, gamma rate heterogeneity and invariant sites"
projectURL="https://github.com/BEAST2-Dev/bModelTest/wiki">
<depends on='BEAST.base' atleast='2.7.0' atmost='2.7.9'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name='bModelTest' version='1.3.1'
url="https://github.com/BEAST2-Dev/bModelTest/releases/download/v1.3.0/bModelTest.addon.v1.3.1.zip"
description="Bayesian model test for nucleotide subst models, gamma rate heterogeneity and invariant sites"
projectURL="https://github.com/BEAST2-Dev/bModelTest/wiki">
<depends on='BEAST.base' atleast='2.7.0' atmost='2.7.9'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name='bModelTest' version='1.3.2'
url="https://github.com/BEAST2-Dev/bModelTest/releases/download/v.1.3.2/bModelTest.addon.v1.3.2.zip"
description="Bayesian model test for nucleotide subst models, gamma rate heterogeneity and invariant sites"
projectURL="https://github.com/BEAST2-Dev/bModelTest/wiki">
<depends on='BEAST.base' atleast='2.7.0' atmost='2.7.9'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name='bModelTest' version='1.3.3'
url="https://github.com/BEAST2-Dev/bModelTest/releases/download/v1.3.3/bModelTest.addon.v1.3.3.zip"
description="Bayesian model test for nucleotide subst models, gamma rate heterogeneity and invariant sites"
projectURL="https://github.com/BEAST2-Dev/bModelTest/wiki">
<depends on='BEAST.base' atleast='2.7.0' atmost='2.7.9'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name='OBAMA' version='1.1.0'
url="https://github.com/rbouckaert/obama/releases/download/v1.1.0/OBAMA.addon.v1.1.0.zip"
description="OBAMA for Bayesian Amino-acid Model Averaging"
projectURL="https://github.com/rbouckaert/obama/">
<depends on='BEAST.base' atleast='2.7.0' atmost='2.7.9'/>
<depends on='BEAST.app' atleast='2.7.0'/>
<depends on='bModelTest' atleast='1.3.0'/>
</package>
<package name='OBAMA' version='1.1.1'
url="https://github.com/rbouckaert/obama/releases/download/v.1.1.1/OBAMA.addon.v1.1.1.zip"
description="OBAMA for Bayesian Amino-acid Model Averaging"
projectURL="https://github.com/rbouckaert/obama/">
<depends on='BEAST.base' atleast='2.7.0' atmost='2.7.9'/>
<depends on='BEAST.app' atleast='2.7.0'/>
<depends on='bModelTest' atleast='1.3.0'/>
</package>
<package name='BICEPS' version='1.1.0'
url="https://github.com/rbouckaert/biceps/releases/download/v1.1.0/BICEPS.addon.v1.1.0.zip"
description="Bayesian Integrated Coalescent Epoch PlotS + Yule Skyline"
projectURL="https://github.com/rbouckaert/biceps/">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name='BICEPS' version='1.1.1'
url="https://github.com/rbouckaert/biceps/releases/download/v1.1.0/BICEPS.addon.v1.1.1.zip"
description="Bayesian Integrated Coalescent Epoch PlotS + Yule Skyline"
projectURL="https://github.com/rbouckaert/biceps/">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name='BICEPS' version='1.1.2'
url="https://github.com/rbouckaert/biceps/releases/download/v1.1.2/BICEPS.addon.v1.1.2.zip"
description="Bayesian Integrated Coalescent Epoch PlotS + Yule Skyline"
projectURL="https://github.com/rbouckaert/biceps/">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name='ORC' version='1.1.0'
url="https://github.com/jordandouglas/ORC/releases/download/v1.1.0/ORC.addon.v1.1.0.zip"
description="Optimised Relaxed Clock model"
projectURL="https://github.com/jordandouglas/ORC/">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
<depends on='BEASTLabs' atleast='2.0.0'/>
</package>
<package name='ORC' version='1.1.1'
url="https://github.com/jordandouglas/ORC/releases/download/v1.1.1/ORC.addon.v1.1.1.zip"
description="Optimised Relaxed Clock model"
projectURL="https://github.com/jordandouglas/ORC/">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
<depends on='BEASTLabs' atleast='2.0.0'/>
</package>
<package name='ORC' version='1.1.2'
url="https://github.com/jordandouglas/ORC/releases/download/v1.1.2/ORC.addon.v1.1.2.zip"
description="Optimised Relaxed Clock model"
projectURL="https://github.com/jordandouglas/ORC/">
<depends on='BEAST.base' atleast='2.7.5'/>
<depends on='BEAST.app' atleast='2.7.5'/>
<depends on='BEASTLabs' atleast='2.0.0'/>
</package>
<package name='ORC' version='1.2.0'
url="https://github.com/jordandouglas/ORC/releases/download/v1.2.0/ORC.addon.v1.2.0.zip"
description="Optimised Relaxed Clock model"
projectURL="https://github.com/jordandouglas/ORC/">
<depends on='BEAST.base' atleast='2.7.5'/>
<depends on='BEAST.app' atleast='2.7.5'/>
<depends on='BEASTLabs' atleast='2.0.0'/>
</package>
<package name='speedemon' version='1.1.0'
url="https://github.com/rbouckaert/speedemon/releases/download/publish/speedemon.addon.v1.1.0.zip"
description="Fast species delimitation under the multispecies coalescent"
projectURL="https://github.com/rbouckaert/speedemon">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
<depends on='BEASTLabs' atleast='2.0.0'/>
<depends on='ORC' atleast='1.1.0'/>
<depends on='BICEPS' atleast='1.1.0'/>
</package>
<package name='contraband' version='1.0.1'
url="https://raw.githubusercontent.com/CompEvol/packages/main/contraband/contraband.addon.v1.0.1.zip"
description="Scalable brownian models for continuous trait evolution"
projectURL="https://github.com/fkmendes/contraband">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
</package>
<package name='Babel' version='0.4.0'
url="https://github.com/rbouckaert/Babel/releases/download/v0.4.0/Babel.addon.v0.4.0.zip"
description="BABEL = BEAST analysis backing effective linguistics"
projectURL="https://github.com/rbouckaert/Babel">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
<depends on='BEASTLabs' atleast='2.0.0'/>
</package>
<package name='Babel' version='0.4.1'
url="https://github.com/rbouckaert/Babel/releases/download/v0.4.0/Babel.addon.v0.4.1.zip"
description="BABEL = BEAST analysis backing effective linguistics"
projectURL="https://github.com/rbouckaert/Babel">
<depends on='BEAST.base' atleast='2.7.0'/>
<depends on='BEAST.app' atleast='2.7.0'/>
<depends on='BEASTLabs' atleast='2.0.0'/>
</package>
<package name='Babel' version='0.4.2'
url="https://github.com/rbouckaert/Babel/releases/download/v0.4.0/Babel.addon.v0.4.2.zip"
description="BABEL = BEAST analysis backing effective linguistics"
projectURL="https://github.com/rbouckaert/Babel">
<depends on='BEAST.base' atleast='2.7.0'/>
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<package name="SpeciesNetwork" version="1.0.0"
url="https://github.com/zhangchicool/speciesnetwork/releases/download/v1.0.0/SpeciesNetwork.zip"
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<package name="NS" version="1.2.1"
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projectURL="https://github.com/nicfel/CoupledMCMC/">
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<package name="CoupledMCMC" version="1.2.1"
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projectURL="https://github.com/CompEvol/morph-models"
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projectURL="https://github.com/BEAST2-Dev/beast-geo">
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projectURL="https://github.com/BEAST2-Dev/substmodels/">
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projectURL="https://github.com/CompEvol/sampled-ancestors"
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projectURL="https://github.com/BEAST2-Dev/bdsky/"
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projectURL="https://github.com/BEAST2-Dev/bdsky/"
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projectURL="http://indriid.com/software.html">
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projectURL="http://indriid.com/software.html">
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url="http://indriid.com/2022/DENIM.addon.v1.1.0.zip"
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projectURL="http://indriid.com/software.html">
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