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This is a resubmission after fixing a bug that affect mlr and SciencePo.

This is a resubmission, post-review of \dontrun{} usage. Now \dontrun{} is only used in two places: an example that fails on some platforms, and an ggsave() examples which save files on disk.

Test environments

  • OS X, R 3.2.3
  • Ubuntu 14.04, R 3.2.3
  • win-builder (devel and release)

R CMD check results

There were no ERRORs or WARNINGs. I see one NOTE:

  • Found the following (possibly) invalid URLs: URL: http://fueleconomy.gov From: man/mpg.Rd Status: 404 Message: Not Found

    I think the problem is a poorly configured webserver: curl http://fueleconomy.gov works, but curl -I http://fueleconomy.gov (which sends a HEAD request) does not.

Reverse dependencies

  • I ran R CMD check on 674 all reverse dependencies (summary at https://github.com/hadley/ggplot2/blob/master/revdep/). I checked with the dev versions of ggplot2, scales, and gtable, in an effort to maximise problems found.

  • Maintainers with NOTEs, WARNINGs, or ERRORS were notified on Feb 10, and again on Feb 25. I have switched to a new automated system for maintainer notification, which ensures each maintainer gets a personalised email, and hopefully is more likely to take action.

  • I've also tried to give a more detailed breakdown of ERRORs/WARNINGs (but not NOTEs below). Please let me know if there's anything else I can do to make this more helpful.

As far as I can tell, there are 3 failures related to changes to ggplot2:

  • ggtern: checking examples ... ERROR Caused by change in API. Author is aware but hasn't fixed.

  • plotly: checking tests ... ERROR Probably caused by changes to histogram API.

  • precrec: checking tests ... ERROR Using a bad test for class inheritance + minor change in ggplot2.

There were a number of failures that don't appear to be related to changes in ggplot2.

  • archivist: checking examples ... ERROR Looks like ggplot2 2.0.0 problem.

  • BCEA: checking examples ... ERROR I failed to install R2jags.

  • bcrm: checking examples ... ERROR Another JAGS problem

  • dotwhisker: checking examples ... ERROR Needs to attach grid (ggplot2 2.0.0 problem)

  • emil: checking examples ... ERROR Needs very latest version of nlme

  • eyetrackingR: checking examples ... ERROR Needs suggested package (lme4) to run examples

  • fuzzyforest: checking examples ... ERROR Needs GO.db

  • ggthemes: checking tests ... ERROR Automated code style checking failure

  • iNEXT: checking Rd cross-references ... WARNING ggplot2 2.0.0 problem: links to help topic that no longer exists

  • metaheur: checking for missing documentation entries ... ERROR Needs very latest version of nlme

  • mlr: checking examples ... ERROR Needs very latest version of nlme

  • multitable: checking running R code from vignettes ... ERROR Needs lme4

  • preproviz: checking tests ... ERROR Needs very latest version of nlme

  • Rz: checking dependencies in R code ... WARNING Namespace issues

  • sdmvspecies: checking for executable files ... WARNING Includes executable file

Additionally, I:

  • Failed to install dependencies for: AFM, clusterfly, demi, ibmdbR, metaMix, PKgraph, pmc, prcbench, SeqFeatR, SpaDES, specmine, toaster

  • Failed to install: abd, alm, arqas, ARTool, BACA, bamdit, bdscale, bdvis, benchmark, biomod2, brainGraph, brms, BTSPAS, capm, caret, caretEnsemble, ChainLadder, classify, conformal, COPASutils, crmPack, extracat, FAOSTAT, fheatmap, geneSLOPE, gettingtothebottom, gitter, granovaGG, HistDAWass, hyperSpec, IntegratedJM, kobe, LANDD, localgauss, LOGIT, ltbayes, MergeGUI, Methplot, micromap, MissingDataGUI, mizer, morse, MultiMeta, mwaved, ncappc, NeuralNetTools, NMF, nparACT, npregfast, OriGen, partialAR, patPRO, Phxnlme, playwith, PlotPrjNetworks, pomp, PPtreeViz, primerTree, quadrupen, refund.shiny, RobustEM, RSA, RSDA, rstan, rstanarm, RStoolbox, rsvg, SCGLR, seewave, sgd, simmr, sjPlot, snpEnrichment, sparkTable, spikeSlabGAM, spoccutils, strvalidator, tadaatoolbox, tigerstats, tigris, treemap, userfriendlyscience, vmsbase

I think the majority of these are because I'm not currently installing bioconductor packages. I hope to work on that in the future.