Filtering by MapQ

[SDmetagenomics]

Would it be possible to add an option to filter read alignments by mapQ score? This can be useful for metagenomics datasets where many similar organisms are being compared.

[wwood]

Good suggestion Specier. Initial (final?) implementation is at #222 if you wanted to take it for a spin.

[SDmetagenomics]

Wow thank you this is fantastic. Looking forward to the next coverM update! - Spencer ----------------------------------------------- Spencer Diamond, Ph.D. Principal Investigator Innovative Genomics Institute University of California, Berkeley 2151 Berkeley Way Berkeley, CA 94720 Diamond Lab <https://diamondlab.bio/> | IGI <https://innovativegenomics.org/> | BIOME <https://innovativegenomics.org/microbiome-editing/> X: @Dr__Diamond <https://x.com/Dr__Diamond>

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On Sep 16, 2024, at 10:39 PM, Ben J Woodcroft ***@***.***> wrote: Good suggestion Specier. Initial (final?) implementation is at #222 <#222> if you wanted to take it for a spin. — Reply to this email directly, view it on GitHub <#219 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEFTX2OB6AFCSIL7JPS5XRLZW66CLAVCNFSM6AAAAABK2QXIL6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGNJUGU3TCNRQG4>. You are receiving this because you authored the thread.

[wwood]

Thanks for the enthusiasm Spencer.