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CoverM to assess genomes relative proportion in Metatranscriptomics data? #167

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JSSaini opened this issue Jun 2, 2023 · 1 comment
Open

CoverM to assess genomes relative proportion in Metatranscriptomics data? #167

JSSaini opened this issue Jun 2, 2023 · 1 comment

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@JSSaini
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JSSaini commented Jun 2, 2023

Hi, thank you for the wonderful tool. Can coverM be used for assessing genomes or MAGs proportion in metatranscriptomics reads? I guess it might be the normalization of reads prior to assessing the proportion (%)? Thank you.
@songmj86
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I am also interested in this question. Does CoverM support this function? If so, should I use reads only containing mRNA or reads containing both mRNA and rRNA ?

Thank you

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@songmj86 @JSSaini