-
Notifications
You must be signed in to change notification settings - Fork 29
52 lines (51 loc) · 1.3 KB
/
test-coverm.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
name: Test CoverM with Setup-Miniconda From Marketplace
on: [push]
jobs:
miniconda_linux:
name: Miniconda ${{ matrix.os }}
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -l {0}
strategy:
matrix:
os: ["ubuntu-latest"]
steps:
- uses: actions/checkout@v2
- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: test
environment-file: coverm.yml
auto-activate-base: false
mamba-version: "*"
channels: conda-forge,defaults,bioconda
- run: |
conda info
conda list
- name: Run test
run: |
cargo test
miniconda_osx:
name: Miniconda ${{ matrix.os }}
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -l {0}
strategy:
matrix:
os: ["macos-latest"]
steps:
- uses: actions/checkout@v2
- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: test
environment-file: coverm-osx.yml
auto-activate-base: false
mamba-version: "*"
channels: conda-forge,defaults,bioconda
- run: |
conda info
conda list
- name: Run test
run: |
cargo test -- --skip bwa_mem2