output from find_asm_snps.py

[danknight]

Hope you can help. I run this command but didn't see any graphical output.
python find_asm_snps.py -i ./SNV19 -o ./SNV19_out/ -v -g

The output directory just has delta files. nucmer and show-snps executables are already in the $PATH. Any suggestions?

I see the .py script ends with
Find SNPs
find_nucmer_snps()

I am wondering if the script is complete?

Cheers
Dan

[widdowquinn]

Hi Dan,

I'd forgotten that I'd written this. You're right that it isn't complete - I should probably finish it off.

My apologies,

L.