R-ArrayExpressHTS.spec

%global packname  ArrayExpressHTS


%global rlibdir %{_libdir}/R/library


Name:             R-%{packname}
Version:          1.0
Release:          2%{?dist}
Summary:          Arrayexpress high throughput sequencing package

Group:            Applications/Engineering 
License:          Artistic License 2.0
URL:              http://www.ebi.ac.uk/Tools/rwiki/
Source0:          http://www.ebi.ac.uk/Tools/rcloud/downloads/ArrayExpressHTS_1.0.tar.gz
BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)

Requires:         R-svMisc R-sampling R-xtable R-DESeq R-ArrayExpress 
Requires:	  R-RColorBrewer R-biomaRt R >= 2.11.0


BuildRequires:    R-devel tex(latex) R-svMisc R-sampling R-xtable R-DESeq 
BuildRequires:	  R-ArrayExpress R-RColorBrewer R-biomaRt R >= 2.11.0

%description
RNA Sequencing Processing Pipeline and Analysis

%prep
%setup -q -c -n %{packname}

%build

%install
rm -rf %{buildroot}
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css

%check
#TODO; contact upstream to fix non-portable aux.R file
#%{_bindir}/R CMD check %{packname}

%clean
rm -rf %{buildroot}

%files
%defattr(-, root, root, -)
%dir %{rlibdir}/%{packname}
#%doc %{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/html
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/help
%{rlibdir}/%{packname}/libs

%changelog
* Tue May 10 2011 Adam Huffman <bloch@verdurin.com> - 1.0-2
- add missing BR

* Tue Apr 05 2011 Adam Huffman <bloch@verdurin.com> 1.0-1
- initial package for Fedora