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Hi, as is explained in the document, the default the umi length is 6bp, however for my data, there is a 12bp umi at the beginning of each read, how to change the umi length as I can't find any parameter from the connor help or from the source code?
The text was updated successfully, but these errors were encountered:
Hi Shannon,
Connor currently doesn't support custom tag architecture; this is a an important feature and we hope to implement in a subsequent release. In the interim, if you adjust the line in connor/samtools.py:
DEFAULT_TAG_LENGTH = 6
to
DEFAULT_TAG_LENGTH = 12
I believe it will accommodate your tag structure.
Does that make sense?
cg
Hi, as is explained in the document, the default the umi length is 6bp, however for my data, there is a 12bp umi at the beginning of each read, how to change the umi length as I can't find any parameter from the connor help or from the source code?
The text was updated successfully, but these errors were encountered: