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1. tskit tskit Public

   Population-scale genomics

   Python 151 70

2. msprime msprime Public

   Simulate genealogical trees and genomic sequence data using population genetic models

   Python 172 84

3. tsinfer tsinfer Public

   Infer a tree sequence from genetic variation data.

   C 54 13

4. tsdate tsdate Public

   Infer the age of ancestral nodes in a tree sequence.

   Python 19 10

5. tutorials tutorials Public

   A set of tutorials for msprime and tskit.

   Jupyter Notebook 18 15

6. kastore kastore Public

   The key-array store for read-only numerical data.

   C 2 7