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references.bib
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references.bib
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@Article{Wilson2017Good,
author = {Wilson, Greg and Bryan, Jennifer and Cranston, Karen and Kitzes, Justin and Nederbragt, Lex and Teal, Tracy K.},
date = {2017-06},
journaltitle = {{PLOS} Computational Biology},
title = {Good enough practices in scientific computing},
doi = {10.1371/journal.pcbi.1005510},
editor = {Francis Ouellette},
number = {6},
pages = {1-20},
volume = {13},
journal = {PLOS Computational Biology},
month = {06},
publisher = {Public Library of Science},
year = {2017},
}
@Article{Wilson2014Best,
author = {Wilson, Greg and Aruliah, Dhavide A and Brown, C Titus and Hong, Neil P Chue and Davis, Matt and Guy, Richard T and Haddock, Steven HD and Huff, Kathryn D and Mitchell, Ian M and Plumbley, Mark D and others},
journaltitle = {{PLoS} Biology},
title = {Best practices for scientific computing},
doi = {10.1371/journal.pbio.1001745},
editor = {Jonathan A. Eisen},
number = {1},
pages = {e1001745},
volume = {12},
journal = {PLoS biology},
month = jan,
publisher = {Public Library of Science},
year = {2014},
}
@Article{Lee2021Barely,
author = {Lee, Graham and Bacon, Sebastian and Bush, Ian and Fortunato, Laura and Gavaghan, David and Lestang, Thibault and Morton, Caroline and Robinson, Martin and Rocca-Serra, Philippe and Sansone, Susanna-Assunta and others},
journaltitle = {Patterns},
title = {Barely sufficient practices in scientific computing},
doi = {10.1016/j.patter.2021.100206},
number = {2},
pages = {100206},
volume = {2},
journal = {Patterns},
month = feb,
publisher = {Elsevier},
year = {2021},
}
@Article{Poisot2015Best,
author = {Poisot, Timoth{\'e}e},
date = {2015},
journaltitle = {Ideas in Ecology and Evolution},
title = {Best publishing practices to improve user confidence in scientific software},
doi = {10.4033/iee.2015.8.8.f},
number = {1},
volume = {8},
journal = {Ideas in Ecology and Evolution},
publisher = {Queen{\textquotesingle}s University Library},
year = {2015},
}
@Article{Mislan2016Elevating,
author = {Mislan, KAS and Heer, Jeffrey M and White, Ethan P},
journaltitle = {Trends in Ecology {\&}amp$\mathsemicolon$ Evolution},
title = {Elevating the status of code in ecology},
doi = {10.1016/j.tree.2015.11.006},
number = {1},
pages = {4--7},
volume = {31},
journal = {Trends in ecology \& evolution},
month = jan,
publisher = {Elsevier},
year = {2016},
}
@Article{Sandve2013Ten,
author = {Sandve, Geir Kjetil and Nekrutenko, Anton and Taylor, James and Hovig, Eivind},
journaltitle = {{PLoS} Computational Biology},
title = {Ten simple rules for reproducible computational research},
doi = {10.1371/journal.pcbi.1003285},
editor = {Philip E. Bourne},
number = {10},
pages = {e1003285},
volume = {9},
journal = {PLoS computational biology},
month = oct,
publisher = {Public Library of Science San Francisco, USA},
year = {2013},
}
@Article{Hart2016Ten,
author = {Hart, Edmund M and Barmby, Pauline and LeBauer, David and Michonneau, Fran{\c{c}}ois and Mount, Sarah and Mulrooney, Patrick and Poisot, Timoth{\'e}e and Woo, Kara H and Zimmerman, Naupaka B and Hollister, Jeffrey W},
journaltitle = {{PLOS} Computational Biology},
title = {Ten simple rules for digital data storage},
doi = {10.1371/journal.pcbi.1005097},
editor = {Scott Markel},
number = {10},
pages = {e1005097},
volume = {12},
journal = {PLoS computational biology},
month = apr,
publisher = {Public Library of Science San Francisco, CA USA},
year = {2016},
}
@Article{Goodman2014Ten,
author = {Goodman, Alyssa and Pepe, Alberto and Blocker, Alexander W and Borgman, Christine L and Cranmer, Kyle and Crosas, Merce and Di Stefano, Rosanne and Gil, Yolanda and Groth, Paul and Hedstrom, Margaret and others},
title = {Ten simple rules for the care and feeding of scientific data},
doi = {10.1371/journal.pcbi.1003542},
number = {4},
pages = {e1003542},
volume = {10},
journal = {PLoS computational biology},
publisher = {Public Library of Science San Francisco, USA},
qualityassured = {qualityAssured},
year = {2014},
}
@Article{Prlic2012Ten,
author = {Prli{\'c}, Andreas and Procter, James B},
title = {Ten simple rules for the open development of scientific software},
doi = {10.1371/journal.pcbi.1002802},
number = {12},
pages = {e1002802},
volume = {8},
journal = {PLoS Computational Biology},
publisher = {Public Library of Science San Francisco, USA},
year = {2012},
}
@Misc{Carey2018Ten,
author = {Carey, Maureen A and Papin, Jason A},
title = {Ten simple rules for biologists learning to program},
doi = {10.1371/journal.pcbi.1005871},
journal = {PLoS Computational Biology},
number = {1},
pages = {e1005871},
publisher = {Public Library of Science},
volume = {14},
year = {2018},
}
@Misc{Taschuk2017Ten,
author = {Taschuk, Morgan and Wilson, Greg},
title = {Ten simple rules for making research software more robust},
doi = {10.1371/journal.pcbi.1005412},
journal = {PLoS computational biology},
number = {4},
pages = {e1005412},
publisher = {Public Library of Science San Francisco, CA USA},
volume = {13},
year = {2017},
}
@Misc{List2017Ten,
author = {List, Markus and Ebert, Peter and Albrecht, Felipe},
title = {Ten simple rules for developing usable software in computational biology},
doi = {10.1371/journal.pcbi.1005265},
journal = {PLoS computational biology},
number = {1},
pages = {e1005265},
publisher = {Public Library of Science San Francisco, CA USA},
volume = {13},
year = {2017},
}
@Article{Osborne2014Ten,
author = {Osborne, James M and Bernabeu, Miguel O and Bruna, Maria and Calderhead, Ben and Cooper, Jonathan and Dalchau, Neil and Dunn, Sara-Jane and Fletcher, Alexander G and Freeman, Robin and Groen, Derek and others},
title = {Ten simple rules for effective computational research},
doi = {10.1371/journal.pcbi.1003506},
number = {3},
pages = {e1003506},
volume = {10},
journal = {PLoS Computational Biology},
publisher = {Public Library of Science San Francisco, USA},
year = {2014},
}
@Article{Lawlor2022Ten,
author = {Lawlor, Jake and Banville, Francis and Forero-Muñoz, Norma-Rocio and Hébert, Katherine and Martínez-Lanfranco, Juan Andrés and Rogy, Pierre and MacDonald, A. Andrew M.},
title = {Ten simple rules for teaching yourself R},
doi = {10.1371/journal.pcbi.1010372},
number = {9},
pages = {1-9},
volume = {18},
abstract = {null},
journal = {PLOS Computational Biology},
month = {09},
publisher = {Public Library of Science},
year = {2022},
}
@Article{Stevens2018Building,
author = {Stevens, Sarah LR and Kuzak, Mateusz and Martinez, Carlos and Moser, Aurelia and Bleeker, Petra and Galland, Marc},
title = {Building a local community of practice in scientific programming for life scientists},
doi = {10.1371/journal.pbio.2005561},
number = {11},
pages = {e2005561},
volume = {16},
journal = {PLoS Biology},
publisher = {Public Library of Science San Francisco, CA USA},
year = {2018},
}
@Article{Markowetz2017All,
author = {Florian Markowetz},
title = {All biology is computational biology},
doi = {10.1371/journal.pbio.2002050},
number = {3},
pages = {e2002050},
volume = {15},
journal = {{PLOS} Biology},
month = {mar},
publisher = {Public Library of Science ({PLoS})},
year = {2017},
}
@Article{Filazzola2022Call,
author = {Alessandro Filazzola and CJ Lortie},
title = {A call for clean code to effectively communicate science},
doi = {10.1111/2041-210X.13961},
journal = {Methods in Ecology and Evolution},
month = aug,
publisher = {Wiley},
year = {2022},
}
@Article{Herberstein2022Animaltraits,
author = {Marie E. Herberstein and Donald James McLean and Elizabeth Lowe and Jonas O. Wolff and Md Kawsar Khan and Kaitlyn Smith and Andrew P. Allen and Matthew Bulbert and Bruno A. Buzatto and Mark D. B. Eldridge and Daniel Falster and Laura Fernandez Winzer and Simon C. Griffith and Joshua S. Madin and Ajay Narendra and Mark Westoby and Martin J. Whiting and Ian J. Wright and Alexandra J. R. Carthey},
title = {{AnimalTraits} - a curated animal trait database for body mass, metabolic rate and brain size},
doi = {10.1038/s41597-022-01364-9},
number = {1},
volume = {9},
journal = {Scientific Data},
month = jun,
publisher = {Springer Science and Business Media {LLC}},
year = {2022},
}
@Book{Charbonneau2017Natural,
author = {Paul Charbonneau},
date = {2017-05-16},
title = {Natural Complexity: A Modeling Handbook},
isbn = { 978-0691170350},
pagetotal = {376},
publisher = {Princeton University Press},
year = {2017},
}
@Comment{jabref-meta: databaseType:biblatex;}