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graph2ppt connection error when exporting Seurat FeaturePlot in R 4.2 Rmarkdown #53
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Hmm thanks for the bug report.
also produces the error
for me - haven't figured out yet where that is coming from...
Will try to look a bit further where this is coming from... |
I have the similar problem, and I have just updated all my R CRAN packages 3 hours ago. But I found that the ggplot object (like plots made through ggsurvplot() and ggplot2() function ) works fine, but the plotsI build through dotplot() function using the enrichr package for enrichment analysis got the error. I hope my experience will help to find the bug.
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Help!!! I also suffered the same problem. Error in open.connection(con, "rb") : cannot open the connection Hope some can find the solutions, really thanks. |
Dear developer,
Many thanks for the great tool! Very handy.
I'll be grateful for your assistance with the issue below.
I updated my rstudio to the latest version and R to 4.2 and now not able to export getting the error
'Warning in .Internal(environment(fun)) :
closing unused connection 3 (/var/folders/9h/zbzv_b3j3wz2r6mdgw9s2p04000lw8/T//RtmpkTyPis/filee19561b44ad/raster-rId000002.png)
Warning: cannot open file '/var/folders/9h/zbzv_b3j3wz2r6mdgw9s2p04000lw8/T//RtmpkTyPis/filee197fc756a/raster-rId000002.png': No such file or directoryError in open.connection(con, "rb") : cannot open the connection'
I have tried making a reproducible example with the dataset loaded into pbmc found here ( https://cf.10xgenomics.com/samples/cell/pbmc3k/pbmc3k_filtered_gene_bc_matrices.tar.gz )
The code can be run in rmarkdown as below
title: "export trial"
output: html_document
date: "2023-01-25"
Plotting and exporting
The output of session info is below
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