From f5f62084986f139cfc4808f64dc4d00940a6344e Mon Sep 17 00:00:00 2001
From: "stan.donarise" <stan.donarise@gmail.com>
Date: Sun, 8 Sep 2024 02:13:37 +1100
Subject: [PATCH 1/2] matinfio: README added

---
 matinfio/README.md | 67 ++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 67 insertions(+)
 create mode 100644 matinfio/README.md

diff --git a/matinfio/README.md b/matinfio/README.md
new file mode 100644
index 0000000..30a7e28
--- /dev/null
+++ b/matinfio/README.md
@@ -0,0 +1,67 @@
+# `$optimade_cifplayer_matinfio`
+
+The module parses CIF, POSCAR or OPTIMADE structures and prepares them for visualisation.
+
+
+## Building
+
+```bash
+npm exec mam@latest optimade/cifplayer/matinfio
+```
+
+The web module bundle will be in `optimade/cifplayer/matinfio/-/web.js`
+
+
+## Usage example
+
+```js
+const structure = new $optimade_cifplayer_matinfio( data ).player()
+```
+
+### Parameter
+
+**`data`** 
+
+- An object or string containing a structure in CIF, POSCAR or OPTIMADE format. The format will be determined automatically.
+
+### Result
+
+**`structure`** 
+
+- An object of the following type:
+
+	```ts
+	type $optimade_cifplayer_matinfio_player_obj = {
+		cell_matrix?: number[][],
+		descr: {
+			a: number,
+			b: number,
+			c: number,
+			alpha: number,
+			beta: number,
+			gamma: number,
+			symlabel?: string,
+		},
+		overlayed: Record< string, string >,
+		atoms: {
+			fract: {
+				x: number,
+				y: number,
+				z: number,
+			} | null,
+			x: number,
+			y: number,
+			z: number,
+			c: string, //color
+			r: number, //radius
+			symbol: string,
+			label: string,
+			overlays: Record< string, string | number >,
+		}[]
+		sg_name: string,
+		ng_name: number,
+		info: string,
+		mpds_demo: boolean,
+		mpds_data: boolean,
+	}
+	```

From d6ac842d70e6c394391203e00d29eee9d8dea5a3 Mon Sep 17 00:00:00 2001
From: "stan.donarise" <stan.donarise@gmail.com>
Date: Sun, 8 Sep 2024 02:14:46 +1100
Subject: [PATCH 2/2] matinfio: node support

---
 lib/math/math.node.ts                                       | 5 +++++
 lib/math/{math.meta.tree => math.web.meta.tree}             | 0
 lib/spacegroups/spacegroups.node.ts                         | 6 ++++++
 .../{spacegroups.meta.tree => spacegroups.web.meta.tree}    | 0
 matinfio/flatten/{flatten.web.ts => flatten.ts}             | 0
 matinfio/{matinfio.web.ts => matinfio.ts}                   | 0
 matinfio/optimade/{optimade.web.ts => optimade.ts}          | 0
 matinfio/player/{player.web.ts => player.ts}                | 0
 matinfio/poscar/{poscar.web.ts => poscar.ts}                | 0
 matinfio/spacegroup/{spacegroup.web.ts => spacegroup.ts}    | 0
 10 files changed, 11 insertions(+)
 create mode 100644 lib/math/math.node.ts
 rename lib/math/{math.meta.tree => math.web.meta.tree} (100%)
 create mode 100644 lib/spacegroups/spacegroups.node.ts
 rename lib/spacegroups/{spacegroups.meta.tree => spacegroups.web.meta.tree} (100%)
 rename matinfio/flatten/{flatten.web.ts => flatten.ts} (100%)
 rename matinfio/{matinfio.web.ts => matinfio.ts} (100%)
 rename matinfio/optimade/{optimade.web.ts => optimade.ts} (100%)
 rename matinfio/player/{player.web.ts => player.ts} (100%)
 rename matinfio/poscar/{poscar.web.ts => poscar.ts} (100%)
 rename matinfio/spacegroup/{spacegroup.web.ts => spacegroup.ts} (100%)

diff --git a/lib/math/math.node.ts b/lib/math/math.node.ts
new file mode 100644
index 0000000..91c681c
--- /dev/null
+++ b/lib/math/math.node.ts
@@ -0,0 +1,5 @@
+namespace $ {
+
+	export const $optimade_cifplayer_lib_math = $node.mathjs as any
+
+}
diff --git a/lib/math/math.meta.tree b/lib/math/math.web.meta.tree
similarity index 100%
rename from lib/math/math.meta.tree
rename to lib/math/math.web.meta.tree
diff --git a/lib/spacegroups/spacegroups.node.ts b/lib/spacegroups/spacegroups.node.ts
new file mode 100644
index 0000000..641a94b
--- /dev/null
+++ b/lib/spacegroups/spacegroups.node.ts
@@ -0,0 +1,6 @@
+namespace $ {
+
+	export const $optimade_cifplayer_lib_spacegroups = $node['@chemistry/space-groups']
+	export type $optimade_cifplayer_lib_spacegroups_info = import( './_spacegroups' ).SpaceGroupInfo
+
+}
diff --git a/lib/spacegroups/spacegroups.meta.tree b/lib/spacegroups/spacegroups.web.meta.tree
similarity index 100%
rename from lib/spacegroups/spacegroups.meta.tree
rename to lib/spacegroups/spacegroups.web.meta.tree
diff --git a/matinfio/flatten/flatten.web.ts b/matinfio/flatten/flatten.ts
similarity index 100%
rename from matinfio/flatten/flatten.web.ts
rename to matinfio/flatten/flatten.ts
diff --git a/matinfio/matinfio.web.ts b/matinfio/matinfio.ts
similarity index 100%
rename from matinfio/matinfio.web.ts
rename to matinfio/matinfio.ts
diff --git a/matinfio/optimade/optimade.web.ts b/matinfio/optimade/optimade.ts
similarity index 100%
rename from matinfio/optimade/optimade.web.ts
rename to matinfio/optimade/optimade.ts
diff --git a/matinfio/player/player.web.ts b/matinfio/player/player.ts
similarity index 100%
rename from matinfio/player/player.web.ts
rename to matinfio/player/player.ts
diff --git a/matinfio/poscar/poscar.web.ts b/matinfio/poscar/poscar.ts
similarity index 100%
rename from matinfio/poscar/poscar.web.ts
rename to matinfio/poscar/poscar.ts
diff --git a/matinfio/spacegroup/spacegroup.web.ts b/matinfio/spacegroup/spacegroup.ts
similarity index 100%
rename from matinfio/spacegroup/spacegroup.web.ts
rename to matinfio/spacegroup/spacegroup.ts