From 5355937e4620df5dacdded69584d783ddf76f2bb Mon Sep 17 00:00:00 2001 From: Thomas Lin Pedersen Date: Fri, 17 Mar 2023 08:02:27 +0100 Subject: [PATCH] Prepare for release and fix issues --- DESCRIPTION | 2 +- NEWS.md | 44 +- R/facet-grid-.R | 2 +- R/quick-plot.R | 2 +- R/stat-smooth.R | 9 +- cran-comments.md | 111 ++- revdep/README.md | 157 ++- revdep/cran.md | 103 +- revdep/failures.md | 2358 +++++++++++++++----------------------------- revdep/problems.md | 377 ++++++- 10 files changed, 1367 insertions(+), 1798 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index f792f99c55..6e7fded4bf 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: ggplot2 -Version: 3.4.1.9000 +Version: 3.4.2 Title: Create Elegant Data Visualisations Using the Grammar of Graphics Authors@R: c( person("Hadley", "Wickham", , "hadley@posit.co", role = "aut", diff --git a/NEWS.md b/NEWS.md index 0969633a9e..97bfe9195d 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,28 +1,44 @@ -# ggplot2 (development version) +# ggplot2 3.4.2 +This is a hotfix release anticipating changes in r-devel, but folds in upkeep +changes and a few bug fixes as well. + +## Minor improvements + +* Various type checks and their messages have been standardised + (@teunbrand, #4834). + +* ggplot2 now uses `scales::DiscreteRange` and `scales::ContinuousRange`, which + are available to write scale extensions from scratch (@teunbrand, #2710). + +* The `layer_data()`, `layer_scales()` and `layer_grob()` now have the default + `plot = last_plot()` (@teunbrand, #5166). + +* The `datetime_scale()` scale constructor is now exported for use in extension + packages (@teunbrand, #4701). + +## Bug fixes + +* `update_geom_defaults()` and `update_stat_defaults()` now return properly + classed objects and have updated docs (@dkahle, #5146). + +* For the purposes of checking required or non-missing aesthetics, character + vectors are no longer considered non-finite (@teunbrand, @4284). * `annotation_logticks()` skips drawing ticks when the scale range is non-finite instead of throwing an error (@teunbrand, #5229). + * Fixed spurious warnings when the `weight` was used in `stat_bin_2d()`, `stat_boxplot()`, `stat_contour()`, `stat_bin_hex()` and `stat_quantile()` (@teunbrand, #5216). -* Various type checks and their messages have been standardised - (@teunbrand, #4834). -* The `layer_data()`, `layer_scales()` and `layer_grob()` now have the default - `plot = last_plot()` (@teunbrand, #5166). + * To prevent changing the plotting order, `stat_sf()` is now computed per panel instead of per group (@teunbrand, #4340). -* ggplot2 now uses `scales::DiscreteRange` and `scales::ContinuousRange`, which - are available to write scale extensions from scratch (@teunbrand, #2710). -* For the purposes of checking required or non-missing aesthetics, character - vectors are no longer considered non-finite (@teunbrand, @4284). + * Fixed bug in `coord_sf()` where graticule lines didn't obey - `panel.grid.major`'s linewidth setting (@teunbrand, #5179) -* The `datetime_scale()` scale constructor is now exported for use in extension - packages (@teunbrand, #4701). + `panel.grid.major`'s linewidth setting (@teunbrand, #5179). + * `geom_text()` drops observations where `angle = NA` instead of throwing an error (@teunbrand, #2757). -* `update_geom_defaults()` and `update_stat_defaults()` now return properly - classed objects and have updated docs (@dkahle, #5146) # ggplot2 3.4.1 This is a small release focusing on fixing regressions in the 3.4.0 release diff --git a/R/facet-grid-.R b/R/facet-grid-.R index f6d12a73b1..5bf0fa3d87 100644 --- a/R/facet-grid-.R +++ b/R/facet-grid-.R @@ -116,7 +116,7 @@ facet_grid <- function(rows = NULL, cols = NULL, scales = "fixed", # `facets` is deprecated and renamed to `rows` if (lifecycle::is_present(facets)) { deprecate_warn0("2.2.0", "facet_grid(facets)", "facet_grid(rows)") - row <- facets + rows <- facets } # Should become a warning in a future release diff --git a/R/quick-plot.R b/R/quick-plot.R index 13d4d1e9a5..0ef5852cfb 100644 --- a/R/quick-plot.R +++ b/R/quick-plot.R @@ -142,7 +142,7 @@ qplot <- function(x, y, ..., data, facets = NULL, margins = FALSE, } else if (is.formula(facets) && length(facets) == 2) { p <- p + facet_wrap(facets) } else { - p <- p + facet_grid(facets = deparse(facets), margins = margins) + p <- p + facet_grid(rows = deparse(facets), margins = margins) } if (!is.null(main)) p <- p + ggtitle(main) diff --git a/R/stat-smooth.R b/R/stat-smooth.R index 5216b870c8..691d16fa02 100644 --- a/R/stat-smooth.R +++ b/R/stat-smooth.R @@ -113,7 +113,7 @@ StatSmooth <- ggproto("StatSmooth", Stat, msg <- c(msg, paste0("formula = '", deparse(params$formula), "'")) } if (identical(params$method, "gam")) { - params$method <- mgcv::gam + params$method <- gam_method() } if (length(msg) > 0) { @@ -161,13 +161,13 @@ StatSmooth <- ggproto("StatSmooth", Stat, if (is.character(method)) { if (identical(method, "gam")) { - method <- mgcv::gam + method <- gam_method() } else { method <- match.fun(method) } } # If gam and gam's method is not specified by the user then use REML - if (identical(method, mgcv::gam) && is.null(method.args$method)) { + if (identical(method, gam_method()) && is.null(method.args$method)) { method.args$method <- "REML" } @@ -187,3 +187,6 @@ StatSmooth <- ggproto("StatSmooth", Stat, required_aes = c("x", "y") ) + +# This function exists to silence an undeclared import warning +gam_method <- function() mgcv::gam diff --git a/cran-comments.md b/cran-comments.md index dc831356e7..2a13d28867 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,70 +1,73 @@ -This is a patch release fixing a couple of regressions in the last release. We -see two failing revdeps at the time of submission. Both have been notified 16 -days ago. +This is a patch release responding to a request from CRAN about new warnings in +R-devel. It also includes a small batch of of bug fixes since last release. +There are no user facing changes. + +All breaking reverse dependencies have been notified. ## revdepcheck results -We checked 4375 reverse dependencies (4350 from CRAN + 25 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. +We checked 4503 reverse dependencies (4468 from CRAN + 35 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. - * We saw 2 new problems - * We failed to check 46 packages + * We saw 8 new problems + * We failed to check 29 packages Issues with CRAN packages are summarised below. ### New problems (This reports the first line of each new failure) -* listdown - checking tests ... ERROR +* afex + checking re-building of vignette outputs ... WARNING + +* dalmatian + checking re-building of vignette outputs ... WARNING + +* DriveML + checking re-building of vignette outputs ... WARNING + +* EcoEnsemble + checking re-building of vignette outputs ... WARNING + +* ggtern + checking Rd files ... WARNING + +* siland + checking re-building of vignette outputs ... WARNING + +* TCIU + checking re-building of vignette outputs ... WARNING * xpose checking tests ... ERROR ### Failed to check -* AFM (NA) -* AssetCorr (NA) -* bayesnec (NA) -* bayesrules (NA) -* cinaR (NA) -* eefAnalytics (NA) -* escalation (NA) -* ESTER (NA) -* genekitr (NA) -* ggPMX (NA) -* grandR (NA) -* hmmTMB (NA) -* immcp (NA) -* INSPECTumours (NA) -* IRexamples (NA) -* loon.ggplot (NA) -* MarketMatching (NA) -* MARVEL (NA) -* multilevelcoda (NA) -* nestedcv (NA) -* nlmixr2 (NA) -* nlmixr2extra (NA) -* nlmixr2plot (NA) -* nlmixr2rpt (NA) -* numbat (NA) -* OlinkAnalyze (NA) -* OpenMx (NA) -* ordbetareg (NA) -* PFIM (NA) -* PlasmaMutationDetector2 (NA) -* Platypus (NA) -* RcppCensSpatial (NA) -* rdddr (NA) -* rdss (NA) -* rstan (NA) -* RVA (NA) -* SCpubr (NA) -* tidyposterior (NA) -* tidySEM (NA) -* tinyarray (NA) -* TVMM (NA) -* valse (NA) -* vivid (NA) -* wearables (NA) -* webSDM (NA) -* xpose.nlmixr2 (NA) +* beadplexr (NA) +* CausalImpact (NA) +* CensMFM (NA) +* cinaR (NA) +* ctsem (NA) +* genekitr (NA) +* ggh4x (NA) +* glmmPen (NA) +* grandR (NA) +* immcp (NA) +* loon.ggplot (NA) +* MACP (NA) +* MarketMatching (NA) +* MARVEL (NA) +* nlmixr2rpt (NA) +* numbat (NA) +* OlinkAnalyze (NA) +* OpenMx (NA) +* Platypus (NA) +* PsychWordVec (NA) +* RcppCensSpatial (NA) +* rstan (NA) +* RVA (NA) +* rxode2 (NA) +* SCpubr (NA) +* tidySEM (NA) +* tinyarray (NA) +* valse (NA) +* vivid (NA) diff --git a/revdep/README.md b/revdep/README.md index 219e82565c..2018c6f4e1 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,85 +1,84 @@ # Revdeps -## Failed to check (71) +## Failed to check (64) -|package |version |error |warning |note | -|:-----------------------|:-------|:-----|:-------|:----| -|AFM |2.0 |1 | | | -|AssetCorr |1.0.4 |1 | | | -|bayesnec |2.1.0.0 |1 | |1 | -|bayesrules |0.0.2 |1 | | | -|cinaR |? | | | | -|NA |? | | | | -|NA |? | | | | -|NA |? | | | | -|NA |? | | | | -|eefAnalytics |1.1.0 |1 | | | -|NA |? | | | | -|escalation |0.1.4 |1 | | | -|NA |? | | | | -|ESTER |0.2.0 |1 | | | -|NA |? | | | | -|genekitr |? | | | | -|ggPMX |? | | | | -|grandR |? | | | | -|hmmTMB |1.0.1 |1 | |1 | -|immcp |? | | | | -|INSPECTumours |0.1.0 |1 | | | -|NA |? | | | | -|IRexamples |0.0.2 |1 | | | -|NA |? | | | | -|NA |? | | | | -|loon.ggplot |? | | | | -|NA |? | | | | -|MarketMatching |? | | | | -|MARVEL |? | | | | -|NA |? | | | | -|NA |? | | | | -|NA |? | | | | -|multilevelcoda |1.0.0 |1 | | | -|nestedcv |0.4.4 |1 | | | -|nlmixr2 |? | | | | -|nlmixr2extra |? | | | | -|nlmixr2plot |? | | | | -|nlmixr2rpt |? | | | | -|numbat |? | | | | -|NA |? | | | | -|OlinkAnalyze |? | | | | -|OpenMx |? | | | | -|ordbetareg |0.5.0 |1 | | | -|PFIM |5.0 |1 | | | -|PlasmaMutationDetector2 |? | | | | -|Platypus |? | | | | -|NA |? | | | | -|NA |? | | | | -|RcppCensSpatial |? | | | | -|NA |? | | | | -|rdddr |? | | | | -|rdss |? | | | | -|NA |? | | | | -|rstan |2.21.8 |1 | | | -|RVA |? | | | | -|NA |? | | | | -|SCpubr |? | | | | -|tidyposterior |1.0.0 |1 | | | -|tidySEM |? | | | | -|NA |? | | | | -|tinyarray |? | | | | -|TVMM |3.2.1 |1 | | | -|valse |0.1-0 |1 | | | -|NA |? | | | | -|NA |? | | | | -|vivid |? | | | | -|wearables |0.8.1 |1 | | | -|webSDM |1.1-1 |1 | | | -|NA |? | | | | -|NA |? | | | | -|xpose.nlmixr2 |? | | | | +|package |version |error |warning |note | +|:--------------------------|:-------|:------|:-------|:----| +|NA |? | | | | +|beadplexr |? | | | | +|CausalImpact |? | | | | +|CensMFM |? | | | | +|cinaR |? | | | | +|NA |? | | | | +|NA |? | | | | +|ctsem |3.7.6 |1 | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|genekitr |? | | | | +|[ggh4x](failures.md#ggh4x) |0.2.3 |__+1__ | | | +|NA |? | | | | +|glmmPen |1.5.3.0 |1 | | | +|grandR |? | | | | +|immcp |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|loon.ggplot |? | | | | +|MACP |? | | | | +|NA |? | | | | +|MarketMatching |? | | | | +|MARVEL |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|nlmixr2rpt |? | | | | +|numbat |? | | | | +|NA |? | | | | +|OlinkAnalyze |? | | | | +|OpenMx |? | | | | +|Platypus |? | | | | +|PsychWordVec |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|RcppCensSpatial |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|rstan |2.21.8 |1 | | | +|RVA |? | | | | +|rxode2 |2.0.11 |1 | |1 | +|NA |? | | | | +|SCpubr |? | | | | +|tidySEM |? | | | | +|NA |? | | | | +|tinyarray |? | | | | +|valse |0.1-0 |1 | | | +|NA |? | | | | +|NA |? | | | | +|vivid |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | -## New problems (2) +## New problems (8) -|package |version |error |warning |note | -|:--------------------------------|:-------|:------|:-------|:----| -|[listdown](problems.md#listdown) |0.5.4 |__+1__ | |1 | -|[xpose](problems.md#xpose) |0.4.14 |__+1__ | | | +|package |version |error |warning |note | +|:--------------------------------------|:-------|:------|:-------|:----| +|[afex](problems.md#afex) |1.2-1 | |__+1__ | | +|[dalmatian](problems.md#dalmatian) |1.0.0 | |__+1__ | | +|[DriveML](problems.md#driveml) |0.1.5 | |__+1__ |1 | +|[EcoEnsemble](problems.md#ecoensemble) |1.0.2 | |__+1__ |3 | +|[ggtern](problems.md#ggtern) |3.4.1 | |__+1__ |2 | +|[siland](problems.md#siland) |2.0.5 | |__+1__ | | +|[TCIU](problems.md#tciu) |1.2.2 | |__+1__ |1 | +|[xpose](problems.md#xpose) |0.4.15 |__+1__ | | | diff --git a/revdep/cran.md b/revdep/cran.md index 1a662f98ff..4ad01b49d2 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,66 +1,67 @@ ## revdepcheck results -We checked 4375 reverse dependencies (4350 from CRAN + 25 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. +We checked 4503 reverse dependencies (4468 from CRAN + 35 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. - * We saw 2 new problems - * We failed to check 46 packages + * We saw 8 new problems + * We failed to check 29 packages Issues with CRAN packages are summarised below. ### New problems (This reports the first line of each new failure) -* listdown - checking tests ... ERROR +* afex + checking re-building of vignette outputs ... WARNING + +* dalmatian + checking re-building of vignette outputs ... WARNING + +* DriveML + checking re-building of vignette outputs ... WARNING + +* EcoEnsemble + checking re-building of vignette outputs ... WARNING + +* ggtern + checking Rd files ... WARNING + +* siland + checking re-building of vignette outputs ... WARNING + +* TCIU + checking re-building of vignette outputs ... WARNING * xpose checking tests ... ERROR ### Failed to check -* AFM (NA) -* AssetCorr (NA) -* bayesnec (NA) -* bayesrules (NA) -* cinaR (NA) -* eefAnalytics (NA) -* escalation (NA) -* ESTER (NA) -* genekitr (NA) -* ggPMX (NA) -* grandR (NA) -* hmmTMB (NA) -* immcp (NA) -* INSPECTumours (NA) -* IRexamples (NA) -* loon.ggplot (NA) -* MarketMatching (NA) -* MARVEL (NA) -* multilevelcoda (NA) -* nestedcv (NA) -* nlmixr2 (NA) -* nlmixr2extra (NA) -* nlmixr2plot (NA) -* nlmixr2rpt (NA) -* numbat (NA) -* OlinkAnalyze (NA) -* OpenMx (NA) -* ordbetareg (NA) -* PFIM (NA) -* PlasmaMutationDetector2 (NA) -* Platypus (NA) -* RcppCensSpatial (NA) -* rdddr (NA) -* rdss (NA) -* rstan (NA) -* RVA (NA) -* SCpubr (NA) -* tidyposterior (NA) -* tidySEM (NA) -* tinyarray (NA) -* TVMM (NA) -* valse (NA) -* vivid (NA) -* wearables (NA) -* webSDM (NA) -* xpose.nlmixr2 (NA) +* beadplexr (NA) +* CausalImpact (NA) +* CensMFM (NA) +* cinaR (NA) +* ctsem (NA) +* genekitr (NA) +* ggh4x (NA) +* glmmPen (NA) +* grandR (NA) +* immcp (NA) +* loon.ggplot (NA) +* MACP (NA) +* MarketMatching (NA) +* MARVEL (NA) +* nlmixr2rpt (NA) +* numbat (NA) +* OlinkAnalyze (NA) +* OpenMx (NA) +* Platypus (NA) +* PsychWordVec (NA) +* RcppCensSpatial (NA) +* rstan (NA) +* RVA (NA) +* rxode2 (NA) +* SCpubr (NA) +* tidySEM (NA) +* tinyarray (NA) +* valse (NA) +* vivid (NA) diff --git a/revdep/failures.md b/revdep/failures.md index 6c703b0c0e..389a61d7e6 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1,269 +1,243 @@ -# AFM +# NA
-* Version: 2.0 +* Version: NA * GitHub: NA -* Source code: https://github.com/cran/AFM -* Date/Publication: 2020-10-07 08:00:06 UTC -* Number of recursive dependencies: 113 +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 -Run `cloud_details(, "AFM")` for more info +Run `cloud_details(, "NA")` for more info
-## In both - -* checking whether package ‘AFM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/AFM/new/AFM.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘AFM’ ... -** package ‘AFM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘tidyr’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘AFM’ -* removing ‘/tmp/workdir/AFM/new/AFM.Rcheck/AFM’ + + + + ``` ### CRAN ``` -* installing *source* package ‘AFM’ ... -** package ‘AFM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘tidyr’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘AFM’ -* removing ‘/tmp/workdir/AFM/old/AFM.Rcheck/AFM’ + + + + ``` -# AssetCorr +# beadplexr
-* Version: 1.0.4 +* Version: 0.4.1 * GitHub: NA -* Source code: https://github.com/cran/AssetCorr -* Date/Publication: 2021-05-05 15:30:02 UTC -* Number of recursive dependencies: 51 +* Source code: https://github.com/cran/beadplexr +* Date/Publication: 2022-03-05 13:50:02 UTC +* Number of recursive dependencies: 128 -Run `cloud_details(, "AssetCorr")` for more info +Run `cloud_details(, "beadplexr")` for more info
-## In both - -* checking whether package ‘AssetCorr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/AssetCorr/new/AssetCorr.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘AssetCorr’ ... -** package ‘AssetCorr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘ADGofTest’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘AssetCorr’ -* removing ‘/tmp/workdir/AssetCorr/new/AssetCorr.Rcheck/AssetCorr’ +* using log directory ‘/tmp/workdir/beadplexr/new/beadplexr.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘beadplexr/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘beadplexr’ version ‘0.4.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +... + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘cba_macsplex_example.Rmd’ using ‘UTF-8’... OK + ‘legendplex_analysis.Rmd’ using ‘UTF-8’... OK + ‘preparing_flow_data.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + ``` ### CRAN ``` -* installing *source* package ‘AssetCorr’ ... -** package ‘AssetCorr’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘ADGofTest’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘AssetCorr’ -* removing ‘/tmp/workdir/AssetCorr/old/AssetCorr.Rcheck/AssetCorr’ +* using log directory ‘/tmp/workdir/beadplexr/old/beadplexr.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘beadplexr/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘beadplexr’ version ‘0.4.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +... + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘cba_macsplex_example.Rmd’ using ‘UTF-8’... OK + ‘legendplex_analysis.Rmd’ using ‘UTF-8’... OK + ‘preparing_flow_data.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + ``` -# bayesnec +# CausalImpact
-* Version: 2.1.0.0 -* GitHub: https://github.com/open-aims/bayesnec -* Source code: https://github.com/cran/bayesnec -* Date/Publication: 2022-12-15 06:40:02 UTC -* Number of recursive dependencies: 133 +* Version: 1.3.0 +* GitHub: NA +* Source code: https://github.com/cran/CausalImpact +* Date/Publication: 2022-11-09 08:40:40 UTC +* Number of recursive dependencies: 79 -Run `cloud_details(, "bayesnec")` for more info +Run `cloud_details(, "CausalImpact")` for more info
-## In both +## Error before installation -* checking whether package ‘bayesnec’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bayesnec/new/bayesnec.Rcheck/00install.out’ for details. - ``` +### Devel -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘rstan’ - ``` +``` +* using log directory ‘/tmp/workdir/CausalImpact/new/CausalImpact.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘CausalImpact/DESCRIPTION’ ... OK +* this is package ‘CausalImpact’ version ‘1.3.0’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'bsts', 'Boom' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR -## Installation -### Devel -``` -* installing *source* package ‘bayesnec’ ... -** package ‘bayesnec’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘rstan’ is not available and has been replaced -by .GlobalEnv when processing object ‘manec_example’ -Warning: namespace ‘brms’ is not available and has been replaced -by .GlobalEnv when processing object ‘manec_example’ -... -by .GlobalEnv when processing object ‘manec_example’ -Warning: namespace ‘rstan’ is not available and has been replaced -by .GlobalEnv when processing object ‘manec_example’ -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘brms’ in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘rstan’ -Execution halted -ERROR: lazy loading failed for package ‘bayesnec’ -* removing ‘/tmp/workdir/bayesnec/new/bayesnec.Rcheck/bayesnec’ ``` ### CRAN ``` -* installing *source* package ‘bayesnec’ ... -** package ‘bayesnec’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘rstan’ is not available and has been replaced -by .GlobalEnv when processing object ‘manec_example’ -Warning: namespace ‘brms’ is not available and has been replaced -by .GlobalEnv when processing object ‘manec_example’ -... -by .GlobalEnv when processing object ‘manec_example’ -Warning: namespace ‘rstan’ is not available and has been replaced -by .GlobalEnv when processing object ‘manec_example’ -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘brms’ in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘rstan’ -Execution halted -ERROR: lazy loading failed for package ‘bayesnec’ -* removing ‘/tmp/workdir/bayesnec/old/bayesnec.Rcheck/bayesnec’ +* using log directory ‘/tmp/workdir/CausalImpact/old/CausalImpact.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘CausalImpact/DESCRIPTION’ ... OK +* this is package ‘CausalImpact’ version ‘1.3.0’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'bsts', 'Boom' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` -# bayesrules +# CensMFM
-* Version: 0.0.2 -* GitHub: https://github.com/bayes-rules/bayesrules -* Source code: https://github.com/cran/bayesrules -* Date/Publication: 2021-09-25 04:30:07 UTC -* Number of recursive dependencies: 134 +* Version: 3.0 +* GitHub: NA +* Source code: https://github.com/cran/CensMFM +* Date/Publication: 2023-01-30 14:00:10 UTC +* Number of recursive dependencies: 41 -Run `cloud_details(, "bayesrules")` for more info +Run `cloud_details(, "CensMFM")` for more info
-## In both - -* checking whether package ‘bayesrules’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bayesrules/new/bayesrules.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘bayesrules’ ... -** package ‘bayesrules’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘bayesrules’ -* removing ‘/tmp/workdir/bayesrules/new/bayesrules.Rcheck/bayesrules’ +* using log directory ‘/tmp/workdir/CensMFM/new/CensMFM.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘CensMFM/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘CensMFM’ version ‘3.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'MomTrunc', 'tlrmvnmvt' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘bayesrules’ ... -** package ‘bayesrules’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘bayesrules’ -* removing ‘/tmp/workdir/bayesrules/old/bayesrules.Rcheck/bayesrules’ +* using log directory ‘/tmp/workdir/CensMFM/old/CensMFM.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘CensMFM/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘CensMFM’ version ‘3.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'MomTrunc', 'tlrmvnmvt' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` @@ -405,38 +379,81 @@ Run `cloud_details(, "NA")` for more info ``` -# NA +# ctsem
-* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 +* Version: 3.7.6 +* GitHub: https://github.com/cdriveraus/ctsem +* Source code: https://github.com/cran/ctsem +* Date/Publication: 2023-03-26 17:10:02 UTC +* Number of recursive dependencies: 137 -Run `cloud_details(, "NA")` for more info +Run `cloud_details(, "ctsem")` for more info
-## Error before installation - -### Devel +## In both -``` +* checking whether package ‘ctsem’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details. + ``` +## Installation +### Devel +``` +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked +** using staged installation +DIAGNOSTIC(S) FROM PARSER: +Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2 + Positive values rounded down, negative values rounded up or down in platform-dependent way. +Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2 + Positive values rounded down, negative values rounded up or down in platform-dependent way. +DIAGNOSTIC(S) FROM PARSER: +... +In file included from stanExports_ctsm.cc:5: +stanExports_ctsm.h: In member function ‘T__ model_ctsm_namespace::model_ctsm::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = true; T__ = double]’: +stanExports_ctsm.h:2091:9: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without + 2091 | T__ log_prob(std::vector& params_r__, + | ^~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stanExports_ctsm.o] Error 1 +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’ ``` ### CRAN ``` +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked +** using staged installation +DIAGNOSTIC(S) FROM PARSER: +Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2 + Positive values rounded down, negative values rounded up or down in platform-dependent way. +Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2 + Positive values rounded down, negative values rounded up or down in platform-dependent way. - - - +DIAGNOSTIC(S) FROM PARSER: +... +In file included from stanExports_ctsm.cc:5: +stanExports_ctsm.h: In member function ‘T__ model_ctsm_namespace::model_ctsm::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = true; T__ = double]’: +stanExports_ctsm.h:2091:9: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without + 2091 | T__ log_prob(std::vector& params_r__, + | ^~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stanExports_ctsm.o] Error 1 +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’ ``` @@ -475,67 +492,38 @@ Run `cloud_details(, "NA")` for more info ``` -# eefAnalytics +# NA
-* Version: 1.1.0 -* GitHub: https://github.com/dimitris-90/eefanalytics -* Source code: https://github.com/cran/eefAnalytics -* Date/Publication: 2022-07-02 21:50:02 UTC -* Number of recursive dependencies: 122 +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 -Run `cloud_details(, "eefAnalytics")` for more info +Run `cloud_details(, "NA")` for more info
-## In both - -* checking whether package ‘eefAnalytics’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/eefAnalytics/new/eefAnalytics.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘eefAnalytics’ ... -** package ‘eefAnalytics’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘eefAnalytics’ -* removing ‘/tmp/workdir/eefAnalytics/new/eefAnalytics.Rcheck/eefAnalytics’ + + + + ``` ### CRAN ``` -* installing *source* package ‘eefAnalytics’ ... -** package ‘eefAnalytics’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘eefAnalytics’ -* removing ‘/tmp/workdir/eefAnalytics/old/eefAnalytics.Rcheck/eefAnalytics’ + + + + ``` @@ -574,63 +562,73 @@ Run `cloud_details(, "NA")` for more info ``` -# escalation +# NA
-* Version: 0.1.4 +* Version: NA * GitHub: NA -* Source code: https://github.com/cran/escalation -* Date/Publication: 2020-10-18 21:40:06 UTC -* Number of recursive dependencies: 127 +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 -Run `cloud_details(, "escalation")` for more info +Run `cloud_details(, "NA")` for more info
-## In both +## Error before installation -* checking whether package ‘escalation’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/escalation/new/escalation.Rcheck/00install.out’ for details. - ``` +### Devel -## Installation +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation ### Devel ``` -* installing *source* package ‘escalation’ ... -** package ‘escalation’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘escalation’ -* removing ‘/tmp/workdir/escalation/new/escalation.Rcheck/escalation’ + + + + ``` ### CRAN ``` -* installing *source* package ‘escalation’ ... -** package ‘escalation’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘escalation’ -* removing ‘/tmp/workdir/escalation/old/escalation.Rcheck/escalation’ + + + + ``` @@ -669,63 +667,73 @@ Run `cloud_details(, "NA")` for more info ``` -# ESTER +# NA
-* Version: 0.2.0 -* GitHub: https://github.com/lnalborczyk/ESTER -* Source code: https://github.com/cran/ESTER -* Date/Publication: 2017-12-10 14:21:14 UTC -* Number of recursive dependencies: 137 +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 -Run `cloud_details(, "ESTER")` for more info +Run `cloud_details(, "NA")` for more info
-## In both +## Error before installation -* checking whether package ‘ESTER’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ESTER/new/ESTER.Rcheck/00install.out’ for details. - ``` +### Devel -## Installation +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation ### Devel ``` -* installing *source* package ‘ESTER’ ... -** package ‘ESTER’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘ESTER’ -* removing ‘/tmp/workdir/ESTER/new/ESTER.Rcheck/ESTER’ + + + + ``` ### CRAN ``` -* installing *source* package ‘ESTER’ ... -** package ‘ESTER’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘ESTER’ -* removing ‘/tmp/workdir/ESTER/old/ESTER.Rcheck/ESTER’ + + + + ``` @@ -768,11 +776,11 @@ Run `cloud_details(, "NA")` for more info
-* Version: 1.0.8 +* Version: 1.1.5 * GitHub: https://github.com/GangLiLab/genekitr * Source code: https://github.com/cran/genekitr -* Date/Publication: 2022-11-23 11:30:02 UTC -* Number of recursive dependencies: 200 +* Date/Publication: 2023-03-23 12:22:08 UTC +* Number of recursive dependencies: 206 Run `cloud_details(, "genekitr")` for more info @@ -790,7 +798,7 @@ Run `cloud_details(, "genekitr")` for more info * using option ‘--no-manual’ * checking for file ‘genekitr/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘genekitr’ version ‘1.0.8’ +* this is package ‘genekitr’ version ‘1.1.5’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR @@ -816,7 +824,7 @@ Status: 1 ERROR * using option ‘--no-manual’ * checking for file ‘genekitr/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘genekitr’ version ‘1.0.8’ +* this is package ‘genekitr’ version ‘1.1.5’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR @@ -832,17 +840,79 @@ Status: 1 ERROR ``` -# ggPMX +# ggh4x
-* Version: 1.2.8 -* GitHub: https://github.com/ggPMXdevelopment/ggPMX -* Source code: https://github.com/cran/ggPMX -* Date/Publication: 2022-06-17 23:10:02 UTC -* Number of recursive dependencies: 177 +* Version: 0.2.3 +* GitHub: https://github.com/teunbrand/ggh4x +* Source code: https://github.com/cran/ggh4x +* Date/Publication: 2022-11-09 08:40:24 UTC +* Number of recursive dependencies: 79 -Run `cloud_details(, "ggPMX")` for more info +Run `cloud_details(, "ggh4x")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggh4x’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ggh4x/new/ggh4x.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ggh4x’ ... +** package ‘ggh4x’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in get(x, envir = ns, inherits = FALSE) : + object 'continuous_range' not found +Error: unable to load R code in package ‘ggh4x’ +Execution halted +ERROR: lazy loading failed for package ‘ggh4x’ +* removing ‘/tmp/workdir/ggh4x/new/ggh4x.Rcheck/ggh4x’ + + +``` +### CRAN + +``` +* installing *source* package ‘ggh4x’ ... +** package ‘ggh4x’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (ggh4x) + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info
@@ -851,27 +921,7 @@ Run `cloud_details(, "ggPMX")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/ggPMX/new/ggPMX.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ggPMX/DESCRIPTION’ ... OK -* this is package ‘ggPMX’ version ‘1.2.8’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... - [ FAIL 1 | WARN 14 | SKIP 8 | PASS 327 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 2 NOTEs + @@ -881,42 +931,74 @@ Status: 1 ERROR, 2 NOTEs ### CRAN ``` -* using log directory ‘/tmp/workdir/ggPMX/old/ggPMX.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘ggPMX/DESCRIPTION’ ... OK -* this is package ‘ggPMX’ version ‘1.2.8’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... - [ FAIL 1 | WARN 14 | SKIP 8 | PASS 327 ] - Error: Test failures - Execution halted -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 ERROR, 2 NOTEs + +``` +# glmmPen + +
+ +* Version: 1.5.3.0 +* GitHub: NA +* Source code: https://github.com/cran/glmmPen +* Date/Publication: 2023-03-15 14:50:07 UTC +* Number of recursive dependencies: 94 + +Run `cloud_details(, "glmmPen")` for more info + +
+ +## In both + +* checking whether package ‘glmmPen’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/glmmPen/new/glmmPen.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘glmmPen’ ... +** package ‘glmmPen’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘glmmPen’ +* removing ‘/tmp/workdir/glmmPen/new/glmmPen.Rcheck/glmmPen’ + + +``` +### CRAN + +``` +* installing *source* package ‘glmmPen’ ... +** package ‘glmmPen’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘glmmPen’ +* removing ‘/tmp/workdir/glmmPen/old/glmmPen.Rcheck/glmmPen’ + + ``` # grandR
-* Version: 0.2.0 +* Version: 0.2.1 * GitHub: https://github.com/erhard-lab/grandR * Source code: https://github.com/cran/grandR -* Date/Publication: 2022-09-20 07:56:10 UTC -* Number of recursive dependencies: 250 +* Date/Publication: 2023-02-27 09:32:39 UTC +* Number of recursive dependencies: 260 Run `cloud_details(, "grandR")` for more info @@ -933,7 +1015,7 @@ Run `cloud_details(, "grandR")` for more info * using session charset: UTF-8 * using option ‘--no-manual’ * checking for file ‘grandR/DESCRIPTION’ ... OK -* this is package ‘grandR’ version ‘0.2.0’ +* this is package ‘grandR’ version ‘0.2.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE @@ -947,7 +1029,7 @@ Run `cloud_details(, "grandR")` for more info ‘getting-started.Rmd’ using ‘UTF-8’... OK * checking re-building of vignette outputs ... OK * DONE -Status: 3 NOTEs +Status: 2 NOTEs @@ -963,7 +1045,7 @@ Status: 3 NOTEs * using session charset: UTF-8 * using option ‘--no-manual’ * checking for file ‘grandR/DESCRIPTION’ ... OK -* this is package ‘grandR’ version ‘0.2.0’ +* this is package ‘grandR’ version ‘0.2.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE @@ -977,94 +1059,11 @@ Status: 3 NOTEs ‘getting-started.Rmd’ using ‘UTF-8’... OK * checking re-building of vignette outputs ... OK * DONE -Status: 3 NOTEs - - - - - -``` -# hmmTMB - -
- -* Version: 1.0.1 -* GitHub: https://github.com/TheoMichelot/hmmTMB -* Source code: https://github.com/cran/hmmTMB -* Date/Publication: 2023-01-13 09:10:02 UTC -* Number of recursive dependencies: 101 - -Run `cloud_details(, "hmmTMB")` for more info - -
- -## In both - -* checking whether package ‘hmmTMB’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/hmmTMB/new/hmmTMB.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘rstan’ - ``` - -## Installation +Status: 2 NOTEs -### Devel -``` -* installing *source* package ‘hmmTMB’ ... -** package ‘hmmTMB’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -** arch - -/opt/R/4.1.1/lib/R/bin/Rscript --vanilla -e "invisible(TMB::compile('hmmTMB.cpp', safebounds = FALSE, safeunload = FALSE))" -make[1]: Entering directory '/tmp/workdir/hmmTMB/new/hmmTMB.Rcheck/00_pkg_src/hmmTMB/src' -g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I"/opt/R/4.1.1/lib/R/site-library/TMB/include" -I"/opt/R/4.1.1/lib/R/site-library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_hmmTMB -DCPPAD_FRAMEWORK -I'/opt/R/4.1.1/lib/R/site-library/TMB/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c hmmTMB.cpp -o hmmTMB.o -g++ -std=gnu++14 -shared -L/opt/R/4.1.1/lib/R/lib -L/usr/local/lib -o hmmTMB.so hmmTMB.o -L/opt/R/4.1.1/lib/R/lib -lR -make[1]: Leaving directory '/tmp/workdir/hmmTMB/new/hmmTMB.Rcheck/00_pkg_src/hmmTMB/src' -... -In checkMatrixPackageVersion() : Package version inconsistency detected. -TMB was built with Matrix version 1.5.3 -Current Matrix version is 1.3.4 -Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package -Error in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘hmmTMB’ -* removing ‘/tmp/workdir/hmmTMB/new/hmmTMB.Rcheck/hmmTMB’ -``` -### CRAN - -``` -* installing *source* package ‘hmmTMB’ ... -** package ‘hmmTMB’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -** arch - -/opt/R/4.1.1/lib/R/bin/Rscript --vanilla -e "invisible(TMB::compile('hmmTMB.cpp', safebounds = FALSE, safeunload = FALSE))" -make[1]: Entering directory '/tmp/workdir/hmmTMB/old/hmmTMB.Rcheck/00_pkg_src/hmmTMB/src' -g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I"/opt/R/4.1.1/lib/R/site-library/TMB/include" -I"/opt/R/4.1.1/lib/R/site-library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_hmmTMB -DCPPAD_FRAMEWORK -I'/opt/R/4.1.1/lib/R/site-library/TMB/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c hmmTMB.cpp -o hmmTMB.o -g++ -std=gnu++14 -shared -L/opt/R/4.1.1/lib/R/lib -L/usr/local/lib -o hmmTMB.so hmmTMB.o -L/opt/R/4.1.1/lib/R/lib -lR -make[1]: Leaving directory '/tmp/workdir/hmmTMB/old/hmmTMB.Rcheck/00_pkg_src/hmmTMB/src' -... -In checkMatrixPackageVersion() : Package version inconsistency detected. -TMB was built with Matrix version 1.5.3 -Current Matrix version is 1.3.4 -Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package -Error in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘hmmTMB’ -* removing ‘/tmp/workdir/hmmTMB/old/hmmTMB.Rcheck/hmmTMB’ - ``` # immcp @@ -1075,7 +1074,7 @@ ERROR: lazy loading failed for package ‘hmmTMB’ * GitHub: https://github.com/YuanlongHu/immcp * Source code: https://github.com/cran/immcp * Date/Publication: 2022-05-12 05:50:02 UTC -* Number of recursive dependencies: 194 +* Number of recursive dependencies: 195 Run `cloud_details(, "immcp")` for more info @@ -1133,67 +1132,38 @@ Status: 1 ERROR ``` -# INSPECTumours +# NA
-* Version: 0.1.0 +* Version: NA * GitHub: NA -* Source code: https://github.com/cran/INSPECTumours -* Date/Publication: 2022-05-06 12:10:02 UTC -* Number of recursive dependencies: 175 +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 -Run `cloud_details(, "INSPECTumours")` for more info +Run `cloud_details(, "NA")` for more info
-## In both - -* checking whether package ‘INSPECTumours’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/INSPECTumours/new/INSPECTumours.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘INSPECTumours’ ... -** package ‘INSPECTumours’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘INSPECTumours’ -* removing ‘/tmp/workdir/INSPECTumours/new/INSPECTumours.Rcheck/INSPECTumours’ + + + + ``` ### CRAN ``` -* installing *source* package ‘INSPECTumours’ ... -** package ‘INSPECTumours’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘INSPECTumours’ -* removing ‘/tmp/workdir/INSPECTumours/old/INSPECTumours.Rcheck/INSPECTumours’ + + + + ``` @@ -1231,70 +1201,6 @@ Run `cloud_details(, "NA")` for more info -``` -# IRexamples - -
- -* Version: 0.0.2 -* GitHub: https://github.com/vinhdizzo/IRexamples -* Source code: https://github.com/cran/IRexamples -* Date/Publication: 2022-08-15 07:10:19 UTC -* Number of recursive dependencies: 184 - -Run `cloud_details(, "IRexamples")` for more info - -
- -## In both - -* checking whether package ‘IRexamples’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘IRexamples’ ... -** package ‘IRexamples’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘IRexamples’ -* removing ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/IRexamples’ - - -``` -### CRAN - -``` -* installing *source* package ‘IRexamples’ ... -** package ‘IRexamples’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘IRexamples’ -* removing ‘/tmp/workdir/IRexamples/old/IRexamples.Rcheck/IRexamples’ - - ``` # NA @@ -1331,16 +1237,17 @@ Run `cloud_details(, "NA")` for more info ``` -# NA +# loon.ggplot
-* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NA -* Number of recursive dependencies: 0 +* Version: 1.3.3 +* GitHub: https://github.com/great-northern-diver/loon.ggplot +* Source code: https://github.com/cran/loon.ggplot +* Date/Publication: 2022-11-12 22:30:02 UTC +* Number of recursive dependencies: 105 -Run `cloud_details(, "NA")` for more info +Run `cloud_details(, "loon.ggplot")` for more info
@@ -1349,7 +1256,25 @@ Run `cloud_details(, "NA")` for more info ### Devel ``` +* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘loon.ggplot’ version ‘1.3.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘loon’ + +Package suggested but not available for checking: ‘zenplots’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR @@ -1358,25 +1283,43 @@ Run `cloud_details(, "NA")` for more info ``` ### CRAN -``` +``` +* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘loon.ggplot’ version ‘1.3.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘loon’ + +Package suggested but not available for checking: ‘zenplots’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR ``` -# loon.ggplot +# MACP
-* Version: 1.3.3 -* GitHub: https://github.com/great-northern-diver/loon.ggplot -* Source code: https://github.com/cran/loon.ggplot -* Date/Publication: 2022-11-12 22:30:02 UTC -* Number of recursive dependencies: 104 +* Version: 0.1.0 +* GitHub: https://github.com/mrbakhsh/MACP +* Source code: https://github.com/cran/MACP +* Date/Publication: 2023-02-28 17:32:30 UTC +* Number of recursive dependencies: 232 -Run `cloud_details(, "loon.ggplot")` for more info +Run `cloud_details(, "MACP")` for more info
@@ -1385,25 +1328,27 @@ Run `cloud_details(, "loon.ggplot")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’ +* using log directory ‘/tmp/workdir/MACP/new/MACP.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK +* checking for file ‘MACP/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘loon.ggplot’ version ‘1.3.3’ +* this is package ‘MACP’ version ‘0.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘loon’ - -Package suggested but not available for checking: ‘zenplots’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘MACP_tutorial.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK * DONE -Status: 1 ERROR +Status: 3 NOTEs @@ -1413,25 +1358,27 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’ +* using log directory ‘/tmp/workdir/MACP/old/MACP.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK +* checking for file ‘MACP/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘loon.ggplot’ version ‘1.3.3’ +* this is package ‘MACP’ version ‘0.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘loon’ - -Package suggested but not available for checking: ‘zenplots’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘MACP_tutorial.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK * DONE -Status: 1 ERROR +Status: 3 NOTEs @@ -1481,7 +1428,7 @@ Run `cloud_details(, "NA")` for more info * GitHub: NA * Source code: https://github.com/cran/MarketMatching * Date/Publication: 2021-01-08 20:10:02 UTC -* Number of recursive dependencies: 73 +* Number of recursive dependencies: 74 Run `cloud_details(, "MarketMatching")` for more info @@ -1547,7 +1494,7 @@ Status: 1 ERROR * GitHub: NA * Source code: https://github.com/cran/MARVEL * Date/Publication: 2022-10-31 10:22:50 UTC -* Number of recursive dependencies: 235 +* Number of recursive dependencies: 236 Run `cloud_details(, "MARVEL")` for more info @@ -1720,275 +1667,16 @@ Run `cloud_details(, "NA")` for more info ``` -# multilevelcoda - -
- -* Version: 1.0.0 -* GitHub: https://github.com/florale/multilevelcoda -* Source code: https://github.com/cran/multilevelcoda -* Date/Publication: 2023-01-13 19:10:02 UTC -* Number of recursive dependencies: 157 - -Run `cloud_details(, "multilevelcoda")` for more info - -
- -## In both - -* checking whether package ‘multilevelcoda’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/multilevelcoda/new/multilevelcoda.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘multilevelcoda’ ... -** package ‘multilevelcoda’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘multilevelcoda’ -* removing ‘/tmp/workdir/multilevelcoda/new/multilevelcoda.Rcheck/multilevelcoda’ - - -``` -### CRAN - -``` -* installing *source* package ‘multilevelcoda’ ... -** package ‘multilevelcoda’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘multilevelcoda’ -* removing ‘/tmp/workdir/multilevelcoda/old/multilevelcoda.Rcheck/multilevelcoda’ - - -``` -# nestedcv - -
- -* Version: 0.4.4 -* GitHub: https://github.com/myles-lewis/nestedcv -* Source code: https://github.com/cran/nestedcv -* Date/Publication: 2022-12-05 12:30:02 UTC -* Number of recursive dependencies: 139 - -Run `cloud_details(, "nestedcv")` for more info - -
- -## In both - -* checking whether package ‘nestedcv’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/nestedcv/new/nestedcv.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘nestedcv’ ... -** package ‘nestedcv’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘nestedcv’ -* removing ‘/tmp/workdir/nestedcv/new/nestedcv.Rcheck/nestedcv’ - - -``` -### CRAN - -``` -* installing *source* package ‘nestedcv’ ... -** package ‘nestedcv’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘nestedcv’ -* removing ‘/tmp/workdir/nestedcv/old/nestedcv.Rcheck/nestedcv’ - - -``` -# nlmixr2 - -
- -* Version: 2.0.8 -* GitHub: https://github.com/nlmixr2/nlmixr2 -* Source code: https://github.com/cran/nlmixr2 -* Date/Publication: 2022-10-23 04:02:36 UTC -* Number of recursive dependencies: 199 - -Run `cloud_details(, "nlmixr2")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/nlmixr2/new/nlmixr2.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘nlmixr2/DESCRIPTION’ ... OK -* this is package ‘nlmixr2’ version ‘2.0.8’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: - 'nlmixr2est', 'nlmixr2extra', 'nlmixr2plot' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/nlmixr2/old/nlmixr2.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘nlmixr2/DESCRIPTION’ ... OK -* this is package ‘nlmixr2’ version ‘2.0.8’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: - 'nlmixr2est', 'nlmixr2extra', 'nlmixr2plot' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# nlmixr2extra - -
- -* Version: 2.0.8 -* GitHub: https://github.com/nlmixr2/nlmixr2extra -* Source code: https://github.com/cran/nlmixr2extra -* Date/Publication: 2022-10-22 22:32:34 UTC -* Number of recursive dependencies: 202 - -Run `cloud_details(, "nlmixr2extra")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/nlmixr2extra/new/nlmixr2extra.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘nlmixr2extra/DESCRIPTION’ ... OK -* this is package ‘nlmixr2extra’ version ‘2.0.8’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'nlmixr2est', 'symengine' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/nlmixr2extra/old/nlmixr2extra.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘nlmixr2extra/DESCRIPTION’ ... OK -* this is package ‘nlmixr2extra’ version ‘2.0.8’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'nlmixr2est', 'symengine' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# nlmixr2plot +# NA
-* Version: 2.0.7 -* GitHub: https://github.com/nlmixr2/nlmixr2plot -* Source code: https://github.com/cran/nlmixr2plot -* Date/Publication: 2022-10-20 03:12:36 UTC -* Number of recursive dependencies: 166 +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 -Run `cloud_details(, "nlmixr2plot")` for more info +Run `cloud_details(, "NA")` for more info
@@ -1997,22 +1685,7 @@ Run `cloud_details(, "nlmixr2plot")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/nlmixr2plot/new/nlmixr2plot.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘nlmixr2plot/DESCRIPTION’ ... OK -* this is package ‘nlmixr2plot’ version ‘2.0.7’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'nlmixr2est', 'nlmixr2extra' -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR @@ -2022,22 +1695,7 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/nlmixr2plot/old/nlmixr2plot.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘nlmixr2plot/DESCRIPTION’ ... OK -* this is package ‘nlmixr2plot’ version ‘2.0.7’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'nlmixr2est', 'nlmixr2extra' -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR @@ -2052,7 +1710,7 @@ Status: 1 ERROR * GitHub: https://github.com/nlmixr2/nlmixr2rpt * Source code: https://github.com/cran/nlmixr2rpt * Date/Publication: 2022-12-05 10:40:02 UTC -* Number of recursive dependencies: 216 +* Number of recursive dependencies: 218 Run `cloud_details(, "nlmixr2rpt")` for more info @@ -2073,7 +1731,8 @@ Run `cloud_details(, "nlmixr2rpt")` for more info * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Packages required but not available: 'nlmixr2extra', 'xpose.nlmixr2' +Packages required but not available: + 'nlmixr2extra', 'rxode2', 'xpose.nlmixr2' Package suggested but not available for checking: ‘nlmixr2’ @@ -2100,7 +1759,8 @@ Status: 1 ERROR * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Packages required but not available: 'nlmixr2extra', 'xpose.nlmixr2' +Packages required but not available: + 'nlmixr2extra', 'rxode2', 'xpose.nlmixr2' Package suggested but not available for checking: ‘nlmixr2’ @@ -2118,10 +1778,10 @@ Status: 1 ERROR
-* Version: 1.2.1 +* Version: 1.2.2 * GitHub: https://github.com/kharchenkolab/numbat * Source code: https://github.com/cran/numbat -* Date/Publication: 2023-01-11 00:20:02 UTC +* Date/Publication: 2023-02-14 18:20:02 UTC * Number of recursive dependencies: 132 Run `cloud_details(, "numbat")` for more info @@ -2139,7 +1799,7 @@ Run `cloud_details(, "numbat")` for more info * using session charset: UTF-8 * using option ‘--no-manual’ * checking for file ‘numbat/DESCRIPTION’ ... OK -* this is package ‘numbat’ version ‘1.2.1’ +* this is package ‘numbat’ version ‘1.2.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR @@ -2164,7 +1824,7 @@ Status: 1 ERROR * using session charset: UTF-8 * using option ‘--no-manual’ * checking for file ‘numbat/DESCRIPTION’ ... OK -* this is package ‘numbat’ version ‘1.2.1’ +* this is package ‘numbat’ version ‘1.2.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR @@ -2219,11 +1879,11 @@ Run `cloud_details(, "NA")` for more info
-* Version: 3.2.2 +* Version: 3.3.1 * GitHub: NA * Source code: https://github.com/cran/OlinkAnalyze -* Date/Publication: 2022-11-16 00:30:05 UTC -* Number of recursive dependencies: 202 +* Date/Publication: 2023-02-27 20:22:30 UTC +* Number of recursive dependencies: 203 Run `cloud_details(, "OlinkAnalyze")` for more info @@ -2241,7 +1901,7 @@ Run `cloud_details(, "OlinkAnalyze")` for more info * using option ‘--no-manual’ * checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘OlinkAnalyze’ version ‘3.2.2’ +* this is package ‘OlinkAnalyze’ version ‘3.3.1’ * package encoding: UTF-8 * checking package namespace information ... OK ... @@ -2271,7 +1931,7 @@ Status: 1 NOTE * using option ‘--no-manual’ * checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘OlinkAnalyze’ version ‘3.2.2’ +* this is package ‘OlinkAnalyze’ version ‘3.3.1’ * package encoding: UTF-8 * checking package namespace information ... OK ... @@ -2295,11 +1955,11 @@ Status: 1 NOTE
-* Version: 2.20.7 +* Version: 2.21.1 * GitHub: https://github.com/OpenMx/OpenMx * Source code: https://github.com/cran/OpenMx -* Date/Publication: 2022-10-19 10:38:03 UTC -* Number of recursive dependencies: 145 +* Date/Publication: 2023-01-19 23:50:02 UTC +* Number of recursive dependencies: 147 Run `cloud_details(, "OpenMx")` for more info @@ -2316,7 +1976,7 @@ Run `cloud_details(, "OpenMx")` for more info * using session charset: UTF-8 * using option ‘--no-manual’ * checking for file ‘OpenMx/DESCRIPTION’ ... OK -* this is package ‘OpenMx’ version ‘2.20.7’ +* this is package ‘OpenMx’ version ‘2.21.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE @@ -2346,7 +2006,7 @@ Status: 4 NOTEs * using session charset: UTF-8 * using option ‘--no-manual’ * checking for file ‘OpenMx/DESCRIPTION’ ... OK -* this is package ‘OpenMx’ version ‘2.20.7’ +* this is package ‘OpenMx’ version ‘2.21.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE @@ -2367,155 +2027,93 @@ Status: 4 NOTEs ``` -# ordbetareg +# Platypus
-* Version: 0.5.0 -* GitHub: https://github.com/saudiwin/ordbetareg_pack -* Source code: https://github.com/cran/ordbetareg -* Date/Publication: 2022-10-25 05:22:36 UTC -* Number of recursive dependencies: 183 +* Version: 3.4.1 +* GitHub: NA +* Source code: https://github.com/cran/Platypus +* Date/Publication: 2022-08-15 07:20:20 UTC +* Number of recursive dependencies: 356 -Run `cloud_details(, "ordbetareg")` for more info +Run `cloud_details(, "Platypus")` for more info
-## In both - -* checking whether package ‘ordbetareg’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/ordbetareg/new/ordbetareg.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘ordbetareg’ ... -** package ‘ordbetareg’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘rstan’ is not available and has been replaced -by .GlobalEnv when processing object ‘ord_fit_mean’ -Warning: namespace ‘ordbetareg’ is not available and has been replaced -by .GlobalEnv when processing object ‘ord_fit_mean’ -... -by .GlobalEnv when processing object ‘ord_fit_phi’ -Warning: namespace ‘rstan’ is not available and has been replaced -by .GlobalEnv when processing object ‘ord_fit_phi’ -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘brms’ in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘rstan’ -Execution halted -ERROR: lazy loading failed for package ‘ordbetareg’ -* removing ‘/tmp/workdir/ordbetareg/new/ordbetareg.Rcheck/ordbetareg’ - - -``` -### CRAN - -``` -* installing *source* package ‘ordbetareg’ ... -** package ‘ordbetareg’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -Warning: namespace ‘rstan’ is not available and has been replaced -by .GlobalEnv when processing object ‘ord_fit_mean’ -Warning: namespace ‘ordbetareg’ is not available and has been replaced -by .GlobalEnv when processing object ‘ord_fit_mean’ +* using log directory ‘/tmp/workdir/Platypus/new/Platypus.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Platypus/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘Platypus’ version ‘3.4.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK ... -by .GlobalEnv when processing object ‘ord_fit_phi’ -Warning: namespace ‘rstan’ is not available and has been replaced -by .GlobalEnv when processing object ‘ord_fit_phi’ -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘brms’ in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called ‘rstan’ -Execution halted -ERROR: lazy loading failed for package ‘ordbetareg’ -* removing ‘/tmp/workdir/ordbetareg/old/ordbetareg.Rcheck/ordbetareg’ - +* checking package dependencies ... ERROR +Package required but not available: ‘ggtree’ -``` -# PFIM +Packages suggested but not available for checking: + 'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers' -
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR -* Version: 5.0 -* GitHub: NA -* Source code: https://github.com/cran/PFIM -* Date/Publication: 2022-06-24 08:10:05 UTC -* Number of recursive dependencies: 131 -Run `cloud_details(, "PFIM")` for more info -
-## In both -* checking whether package ‘PFIM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/PFIM/new/PFIM.Rcheck/00install.out’ for details. - ``` +``` +### CRAN -## Installation +``` +* using log directory ‘/tmp/workdir/Platypus/old/Platypus.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Platypus/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘Platypus’ version ‘3.4.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +... +* checking package dependencies ... ERROR +Package required but not available: ‘ggtree’ -### Devel +Packages suggested but not available for checking: + 'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers' -``` -* installing *source* package ‘PFIM’ ... -** package ‘PFIM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rvest’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘PFIM’ -* removing ‘/tmp/workdir/PFIM/new/PFIM.Rcheck/PFIM’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR -``` -### CRAN -``` -* installing *source* package ‘PFIM’ ... -** package ‘PFIM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rvest’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘PFIM’ -* removing ‘/tmp/workdir/PFIM/old/PFIM.Rcheck/PFIM’ ``` -# PlasmaMutationDetector2 +# PsychWordVec
-* Version: 1.1.11 -* GitHub: NA -* Source code: https://github.com/cran/PlasmaMutationDetector2 -* Date/Publication: 2022-05-03 10:00:08 UTC -* Number of recursive dependencies: 106 +* Version: 0.3.2 +* GitHub: https://github.com/psychbruce/PsychWordVec +* Source code: https://github.com/cran/PsychWordVec +* Date/Publication: 2023-03-04 16:20:02 UTC +* Number of recursive dependencies: 229 -Run `cloud_details(, "PlasmaMutationDetector2")` for more info +Run `cloud_details(, "PsychWordVec")` for more info
@@ -2524,18 +2122,17 @@ Run `cloud_details(, "PlasmaMutationDetector2")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/PlasmaMutationDetector2/new/PlasmaMutationDetector2.Rcheck’ +* using log directory ‘/tmp/workdir/PsychWordVec/new/PsychWordVec.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘PlasmaMutationDetector2/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘PlasmaMutationDetector2’ version ‘1.1.11’ +* checking for file ‘PsychWordVec/DESCRIPTION’ ... OK +* this is package ‘PsychWordVec’ version ‘0.3.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘VariantAnnotation’ +Package required but not available: ‘bruceR’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -2550,18 +2147,17 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/PlasmaMutationDetector2/old/PlasmaMutationDetector2.Rcheck’ +* using log directory ‘/tmp/workdir/PsychWordVec/old/PsychWordVec.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘PlasmaMutationDetector2/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘PlasmaMutationDetector2’ version ‘1.1.11’ +* checking for file ‘PsychWordVec/DESCRIPTION’ ... OK +* this is package ‘PsychWordVec’ version ‘0.3.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘VariantAnnotation’ +Package required but not available: ‘bruceR’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -2573,17 +2169,16 @@ Status: 1 ERROR ``` -# Platypus +# NA
-* Version: 3.4.1 +* Version: NA * GitHub: NA -* Source code: https://github.com/cran/Platypus -* Date/Publication: 2022-08-15 07:20:20 UTC -* Number of recursive dependencies: 356 +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 -Run `cloud_details(, "Platypus")` for more info +Run `cloud_details(, "NA")` for more info
@@ -2592,27 +2187,7 @@ Run `cloud_details(, "Platypus")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/Platypus/new/Platypus.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Platypus/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘Platypus’ version ‘3.4.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -... -* checking package dependencies ... ERROR -Package required but not available: ‘ggtree’ - -Packages suggested but not available for checking: - 'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers' -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR @@ -2622,27 +2197,7 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/Platypus/old/Platypus.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Platypus/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘Platypus’ version ‘3.4.1’ -* package encoding: UTF-8 -* checking package namespace information ... OK -... -* checking package dependencies ... ERROR -Package required but not available: ‘ggtree’ - -Packages suggested but not available for checking: - 'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers' -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR @@ -2727,7 +2282,7 @@ Run `cloud_details(, "NA")` for more info * GitHub: NA * Source code: https://github.com/cran/RcppCensSpatial * Date/Publication: 2022-06-27 23:00:02 UTC -* Number of recursive dependencies: 63 +* Number of recursive dependencies: 64 Run `cloud_details(, "RcppCensSpatial")` for more info @@ -2822,93 +2377,16 @@ Run `cloud_details(, "NA")` for more info ``` -# rdddr +# NA
-* Version: 1.0.0 +* Version: NA * GitHub: NA -* Source code: https://github.com/cran/rdddr -* Date/Publication: 2022-07-03 09:20:02 UTC +* Source code: https://github.com/cran/NA * Number of recursive dependencies: 0 -Run `cloud_details(, "rdddr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/rdddr/new/rdddr.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘rdddr/DESCRIPTION’ ... OK -* this is package ‘rdddr’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... -* checking contents of ‘data’ directory ... OK -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 2 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/rdddr/old/rdddr.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘rdddr/DESCRIPTION’ ... OK -* this is package ‘rdddr’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... -* checking contents of ‘data’ directory ... OK -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 2 NOTEs - - - - - -``` -# rdss - -
- -* Version: 1.0.0 -* GitHub: NA -* Source code: https://github.com/cran/rdss -* Date/Publication: 2023-01-17 17:40:02 UTC -* Number of recursive dependencies: 207 - -Run `cloud_details(, "rdss")` for more info +Run `cloud_details(, "NA")` for more info
@@ -2916,59 +2394,19 @@ Run `cloud_details(, "rdss")` for more info ### Devel -``` -* using log directory ‘/tmp/workdir/rdss/new/rdss.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘rdss/DESCRIPTION’ ... OK -* this is package ‘rdss’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... -* checking contents of ‘data’ directory ... OK -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/rdss/old/rdss.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘rdss/DESCRIPTION’ ... OK -* this is package ‘rdss’ version ‘1.0.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... NOTE -... -* checking contents of ‘data’ directory ... OK -* checking data for non-ASCII characters ... OK -* checking LazyData ... OK -* checking data for ASCII and uncompressed saves ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 1 NOTE - +``` + + + + + + +``` +### CRAN + +``` + + @@ -3095,7 +2533,7 @@ ERROR: compilation failed for package ‘rstan’ * GitHub: https://github.com/THERMOSTATS/RVA * Source code: https://github.com/cran/RVA * Date/Publication: 2021-11-01 21:40:02 UTC -* Number of recursive dependencies: 208 +* Number of recursive dependencies: 209 Run `cloud_details(, "RVA")` for more info @@ -3152,6 +2590,89 @@ Status: 1 ERROR +``` +# rxode2 + +
+ +* Version: 2.0.11 +* GitHub: https://github.com/nlmixr2/rxode2 +* Source code: https://github.com/cran/rxode2 +* Date/Publication: 2022-11-01 21:45:04 UTC +* Number of recursive dependencies: 191 + +Run `cloud_details(, "rxode2")` for more info + +
+ +## In both + +* checking whether package ‘rxode2’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rxode2/new/rxode2.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘symengine’ + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rxode2’ ... +** package ‘rxode2’ successfully unpacked and MD5 sums checked +** using staged installation + +R version 4.1.1 (2021-08-10) -- "Kick Things" +Copyright (C) 2021 The R Foundation for Statistical Computing +Platform: x86_64-pc-linux-gnu (64-bit) + +R is free software and comes with ABSOLUTELY NO WARRANTY. +You are welcome to redistribute it under certain conditions. +... +gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/rxode2parse/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2random/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2et/include' -I'/opt/R/4.1.1/lib/R/site-library/PreciseSums/include' -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -c dscal.c -o dscal.o +gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsphiv.f -o dsphiv.o +g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/rxode2parse/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2random/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2et/include' -I'/opt/R/4.1.1/lib/R/site-library/PreciseSums/include' -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/opt/R/4.1.1/lib/R/site-library/BH/include" -fpic -g -O2 -c etTran.cpp -o etTran.o +etTran.cpp:333:10: fatal error: rxode2etConvertMethod.h: No such file or directory + 333 | #include + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +compilation terminated. +make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:177: etTran.o] Error 1 +ERROR: compilation failed for package ‘rxode2’ +* removing ‘/tmp/workdir/rxode2/new/rxode2.Rcheck/rxode2’ + + +``` +### CRAN + +``` +* installing *source* package ‘rxode2’ ... +** package ‘rxode2’ successfully unpacked and MD5 sums checked +** using staged installation + +R version 4.1.1 (2021-08-10) -- "Kick Things" +Copyright (C) 2021 The R Foundation for Statistical Computing +Platform: x86_64-pc-linux-gnu (64-bit) + +R is free software and comes with ABSOLUTELY NO WARRANTY. +You are welcome to redistribute it under certain conditions. +... +gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/rxode2parse/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2random/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2et/include' -I'/opt/R/4.1.1/lib/R/site-library/PreciseSums/include' -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -c dscal.c -o dscal.o +gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsphiv.f -o dsphiv.o +g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/rxode2parse/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2random/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2et/include' -I'/opt/R/4.1.1/lib/R/site-library/PreciseSums/include' -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/opt/R/4.1.1/lib/R/site-library/BH/include" -fpic -g -O2 -c etTran.cpp -o etTran.o +etTran.cpp:333:10: fatal error: rxode2etConvertMethod.h: No such file or directory + 333 | #include + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +compilation terminated. +make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:177: etTran.o] Error 1 +ERROR: compilation failed for package ‘rxode2’ +* removing ‘/tmp/workdir/rxode2/old/rxode2.Rcheck/rxode2’ + + ``` # NA @@ -3192,10 +2713,10 @@ Run `cloud_details(, "NA")` for more info
-* Version: 1.1.1 +* Version: 1.1.2 * GitHub: https://github.com/enblacar/SCpubr * Source code: https://github.com/cran/SCpubr -* Date/Publication: 2023-01-12 11:30:02 UTC +* Date/Publication: 2023-01-18 12:20:02 UTC * Number of recursive dependencies: 290 Run `cloud_details(, "SCpubr")` for more info @@ -3214,20 +2735,20 @@ Run `cloud_details(, "SCpubr")` for more info * using option ‘--no-manual’ * checking for file ‘SCpubr/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘SCpubr’ version ‘1.1.1’ +* this is package ‘SCpubr’ version ‘1.1.2’ * package encoding: UTF-8 * checking package namespace information ... OK ... - [ FAIL 1 | WARN 0 | SKIP 347 | PASS 320 ] - Error: Test failures - Execution halted +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... NONE ‘reference_manual.Rmd’ using ‘UTF-8’... OK * checking re-building of vignette outputs ... OK * DONE -Status: 1 ERROR, 1 WARNING, 2 NOTEs +Status: 1 WARNING, 2 NOTEs @@ -3244,87 +2765,23 @@ Status: 1 ERROR, 1 WARNING, 2 NOTEs * using option ‘--no-manual’ * checking for file ‘SCpubr/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘SCpubr’ version ‘1.1.1’ +* this is package ‘SCpubr’ version ‘1.1.2’ * package encoding: UTF-8 * checking package namespace information ... OK ... - [ FAIL 1 | WARN 0 | SKIP 347 | PASS 320 ] - Error: Test failures - Execution halted +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... NONE ‘reference_manual.Rmd’ using ‘UTF-8’... OK * checking re-building of vignette outputs ... OK * DONE -Status: 1 ERROR, 1 WARNING, 2 NOTEs - - - - +Status: 1 WARNING, 2 NOTEs -``` -# tidyposterior - -
- -* Version: 1.0.0 -* GitHub: https://github.com/tidymodels/tidyposterior -* Source code: https://github.com/cran/tidyposterior -* Date/Publication: 2022-06-23 20:20:02 UTC -* Number of recursive dependencies: 170 - -Run `cloud_details(, "tidyposterior")` for more info - -
- -## In both - -* checking whether package ‘tidyposterior’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/tidyposterior/new/tidyposterior.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘tidyposterior’ ... -** package ‘tidyposterior’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘tidyposterior’ -* removing ‘/tmp/workdir/tidyposterior/new/tidyposterior.Rcheck/tidyposterior’ -``` -### CRAN - -``` -* installing *source* package ‘tidyposterior’ ... -** package ‘tidyposterior’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘tidyposterior’ -* removing ‘/tmp/workdir/tidyposterior/old/tidyposterior.Rcheck/tidyposterior’ ``` @@ -3336,7 +2793,7 @@ ERROR: lazy loading failed for package ‘tidyposterior’ * GitHub: https://github.com/cjvanlissa/tidySEM * Source code: https://github.com/cran/tidySEM * Date/Publication: 2022-04-14 17:50:02 UTC -* Number of recursive dependencies: 170 +* Number of recursive dependencies: 173 Run `cloud_details(, "tidySEM")` for more info @@ -3358,16 +2815,16 @@ Run `cloud_details(, "tidySEM")` for more info * package encoding: UTF-8 * checking package namespace information ... OK ... -* checking if there is a namespace ... OK -* checking for executable files ... OK -* checking for hidden files and directories ... OK -* checking for portable file names ... OK -* checking for sufficient/correct file permissions ... OK -* checking whether package ‘tidySEM’ can be installed ... ERROR -Installation failed. -See ‘/tmp/workdir/tidySEM/new/tidySEM.Rcheck/00install.out’ for details. +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘Generating_syntax.Rmd’ using ‘UTF-8’... OK + ‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK + ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK + ‘sem_graph.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK * DONE -Status: 1 ERROR, 1 NOTE +Status: 1 NOTE @@ -3388,16 +2845,16 @@ Status: 1 ERROR, 1 NOTE * package encoding: UTF-8 * checking package namespace information ... OK ... -* checking if there is a namespace ... OK -* checking for executable files ... OK -* checking for hidden files and directories ... OK -* checking for portable file names ... OK -* checking for sufficient/correct file permissions ... OK -* checking whether package ‘tidySEM’ can be installed ... ERROR -Installation failed. -See ‘/tmp/workdir/tidySEM/old/tidySEM.Rcheck/00install.out’ for details. +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘Generating_syntax.Rmd’ using ‘UTF-8’... OK + ‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK + ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK + ‘sem_graph.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK * DONE -Status: 1 ERROR, 1 NOTE +Status: 1 NOTE @@ -3443,11 +2900,11 @@ Run `cloud_details(, "NA")` for more info
-* Version: 2.2.7 +* Version: 2.2.9 * GitHub: https://github.com/xjsun1221/tinyarray * Source code: https://github.com/cran/tinyarray -* Date/Publication: 2021-11-08 10:00:02 UTC -* Number of recursive dependencies: 228 +* Date/Publication: 2023-03-04 07:40:02 UTC +* Number of recursive dependencies: 229 Run `cloud_details(, "tinyarray")` for more info @@ -3465,7 +2922,7 @@ Run `cloud_details(, "tinyarray")` for more info * using option ‘--no-manual’ * checking for file ‘tinyarray/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘tinyarray’ version ‘2.2.7’ +* this is package ‘tinyarray’ version ‘2.2.9’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR @@ -3491,7 +2948,7 @@ Status: 1 ERROR * using option ‘--no-manual’ * checking for file ‘tinyarray/DESCRIPTION’ ... OK * checking extension type ... Package -* this is package ‘tinyarray’ version ‘2.2.7’ +* this is package ‘tinyarray’ version ‘2.2.9’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR @@ -3506,66 +2963,6 @@ Status: 1 ERROR -``` -# TVMM - -
- -* Version: 3.2.1 -* GitHub: NA -* Source code: https://github.com/cran/TVMM -* Date/Publication: 2020-12-14 19:50:02 UTC -* Number of recursive dependencies: 68 - -Run `cloud_details(, "TVMM")` for more info - -
- -## In both - -* checking whether package ‘TVMM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/TVMM/new/TVMM.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘TVMM’ ... -** package ‘TVMM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘e1071’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘TVMM’ -* removing ‘/tmp/workdir/TVMM/new/TVMM.Rcheck/TVMM’ - - -``` -### CRAN - -``` -* installing *source* package ‘TVMM’ ... -** package ‘TVMM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘e1071’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘TVMM’ -* removing ‘/tmp/workdir/TVMM/old/TVMM.Rcheck/TVMM’ - - ``` # valse @@ -3719,10 +3116,10 @@ Run `cloud_details(, "NA")` for more info
-* Version: 0.2.3 +* Version: 0.2.5 * GitHub: NA * Source code: https://github.com/cran/vivid -* Date/Publication: 2021-11-20 01:30:02 UTC +* Date/Publication: 2023-02-13 16:40:02 UTC * Number of recursive dependencies: 206 Run `cloud_details(, "vivid")` for more info @@ -3740,7 +3137,7 @@ Run `cloud_details(, "vivid")` for more info * using session charset: UTF-8 * using option ‘--no-manual’ * checking for file ‘vivid/DESCRIPTION’ ... OK -* this is package ‘vivid’ version ‘0.2.3’ +* this is package ‘vivid’ version ‘0.2.5’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE @@ -3754,7 +3151,7 @@ Run `cloud_details(, "vivid")` for more info ‘vividQStart.Rmd’ using ‘UTF-8’... OK * checking re-building of vignette outputs ... OK * DONE -Status: 2 NOTEs +Status: 1 NOTE @@ -3770,7 +3167,7 @@ Status: 2 NOTEs * using session charset: UTF-8 * using option ‘--no-manual’ * checking for file ‘vivid/DESCRIPTION’ ... OK -* this is package ‘vivid’ version ‘0.2.3’ +* this is package ‘vivid’ version ‘0.2.5’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE @@ -3784,134 +3181,10 @@ Status: 2 NOTEs ‘vividQStart.Rmd’ using ‘UTF-8’... OK * checking re-building of vignette outputs ... OK * DONE -Status: 2 NOTEs - - - - - -``` -# wearables - -
- -* Version: 0.8.1 -* GitHub: NA -* Source code: https://github.com/cran/wearables -* Date/Publication: 2021-12-20 15:20:02 UTC -* Number of recursive dependencies: 122 - -Run `cloud_details(, "wearables")` for more info - -
- -## In both - -* checking whether package ‘wearables’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/wearables/new/wearables.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘wearables’ ... -** package ‘wearables’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘wearables’ -* removing ‘/tmp/workdir/wearables/new/wearables.Rcheck/wearables’ - - -``` -### CRAN - -``` -* installing *source* package ‘wearables’ ... -** package ‘wearables’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘wearables’ -* removing ‘/tmp/workdir/wearables/old/wearables.Rcheck/wearables’ - - -``` -# webSDM - -
- -* Version: 1.1-1 -* GitHub: https://github.com/giopogg/webSDM -* Source code: https://github.com/cran/webSDM -* Date/Publication: 2022-11-25 12:40:02 UTC -* Number of recursive dependencies: 189 - -Run `cloud_details(, "webSDM")` for more info - -
- -## In both - -* checking whether package ‘webSDM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/webSDM/new/webSDM.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘webSDM’ ... -** package ‘webSDM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘webSDM’ -* removing ‘/tmp/workdir/webSDM/new/webSDM.Rcheck/webSDM’ +Status: 1 NOTE -``` -### CRAN -``` -* installing *source* package ‘webSDM’ ... -** package ‘webSDM’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- imp[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘rstan’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘webSDM’ -* removing ‘/tmp/workdir/webSDM/old/webSDM.Rcheck/webSDM’ ``` @@ -3985,17 +3258,16 @@ Run `cloud_details(, "NA")` for more info ``` -# xpose.nlmixr2 +# NA
-* Version: 0.4.0 +* Version: NA * GitHub: NA -* Source code: https://github.com/cran/xpose.nlmixr2 -* Date/Publication: 2022-06-08 09:10:02 UTC -* Number of recursive dependencies: 161 +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 -Run `cloud_details(, "xpose.nlmixr2")` for more info +Run `cloud_details(, "NA")` for more info
@@ -4004,25 +3276,7 @@ Run `cloud_details(, "xpose.nlmixr2")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/xpose.nlmixr2/new/xpose.nlmixr2.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘xpose.nlmixr2/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘xpose.nlmixr2’ version ‘0.4.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘nlmixr2est’ -Package suggested but not available for checking: ‘nlmixr2’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR @@ -4032,25 +3286,7 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/xpose.nlmixr2/old/xpose.nlmixr2.Rcheck’ -* using R version 4.1.1 (2021-08-10) -* using platform: x86_64-pc-linux-gnu (64-bit) -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘xpose.nlmixr2/DESCRIPTION’ ... OK -* checking extension type ... Package -* this is package ‘xpose.nlmixr2’ version ‘0.4.0’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘nlmixr2est’ - -Package suggested but not available for checking: ‘nlmixr2’ -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR diff --git a/revdep/problems.md b/revdep/problems.md index 619ce615df..97198cc243 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,57 +1,368 @@ -# listdown +# afex
-* Version: 0.5.4 -* GitHub: https://github.com/kaneplusplus/listdown -* Source code: https://github.com/cran/listdown -* Date/Publication: 2022-11-09 14:50:02 UTC -* Number of recursive dependencies: 74 +* Version: 1.2-1 +* GitHub: https://github.com/singmann/afex +* Source code: https://github.com/cran/afex +* Date/Publication: 2023-01-09 08:40:11 UTC +* Number of recursive dependencies: 224 -Run `cloud_details(, "listdown")` for more info +Run `cloud_details(, "afex")` for more info
## Newly broken -* checking tests ... ERROR +* checking re-building of vignette outputs ... WARNING ``` - Running ‘testthat.r’ - Running the tests in ‘tests/testthat.r’ failed. - Last 13 lines of output: - `ldb` not equal to read_reference("listdown-page-bundle.rds"). - Component "cc": Component "Sepal.Length": Component "Sepal.Width": Component "layers": Component 1: Component 4: Component 6: Component 8: Component 5: target, current do not match when deparsed - Component "cc": Component "Sepal.Length": Component "Sepal.Width": Component "layers": Component 1: Component 12: Component 5: Component 21: Component 1: Component 2: Component 1: Component 6: Component 5: Component 8: Component 10: Component 8: Component 20: target, current do not match when deparsed - Component "cc": Component "Sepal.Length": Component "Sepal.Width": Component "coordinates": Component "super": Component "super": Component "super": Component "super": Component "train_panel_guides": target, current do not match when deparsed - Component "cc": Component "Sepal.Length": Component "Sepal.Width": Component "plot_env": Component "cc": Component "Sepal.Length": Component "Sepal.Width": Component "layers": Component 1: Component 4: Component 6: Component 8: Component 5: target, current do not match when deparsed - Component "cc": Component "Sepal.Length": Component "Sepal.Width": Component "plot_env": Component "cc": Component "Sepal.Length": Component "Sepal.Width": Component "coordinates": Component "super": Component "super": Component "super": Component "super": Component "train_panel_guides": target, current do not match when deparsed - Component "cc": Component "Sepal.Length": Component "Petal.Length": Component "layers": Component 1: Component 4: Component 6: Component 8: Component 5: target, current do not match when deparsed - Component "cc": Component "Sepal.Length": Component "Petal.Length": Component "layers": Component 1: Component 12: Component 5: Component 21: Component 1: Component 2: Component 1: Component 6: Component 5: Component 8: Component 10: Component 8: Component 20: target, current do not match when deparsed - Component "cc": Component "Sepal.Length": Component "Petal.Length": Component "coordinates": Component "super": Component "super": Component "super": Component "super": Component "train_panel_guides": target, current do not match when deparsed - Component "cc": Component "Sepal.Length": Component "Petal.Length": Component "plot_env": Component "cc": Component "Sepal.Length": Component "Sepal.Width": Component "layers": Component 1: Component 4: Component 6: Component 8: Component 5: target, current do not match when deparsed + Error(s) in re-building vignettes: + --- re-building ‘afex_analysing_accuracy_data.Rmd’ using rmarkdown + Quitting from lines 326-331 (afex_analysing_accuracy_data.Rmd) + Error: processing vignette 'afex_analysing_accuracy_data.Rmd' failed with diagnostics: + Problem while computing position. + ℹ Error occurred in the 1st layer. + Caused by error in `ggplot2::remove_missing()`: + ! `na.rm` must be `TRUE` or `FALSE`, not an empty logical vector. + --- failed re-building ‘afex_analysing_accuracy_data.Rmd’ + + ... + --- finished re-building ‘assumptions_of_ANOVAs.Rmd’ + + --- re-building ‘introduction-mixed-models.pdf.asis’ using asis + --- finished re-building ‘introduction-mixed-models.pdf.asis’ + + SUMMARY: processing the following file failed: + ‘afex_analysing_accuracy_data.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# dalmatian + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/dalmatian +* Date/Publication: 2021-11-22 19:40:02 UTC +* Number of recursive dependencies: 92 + +Run `cloud_details(, "dalmatian")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘beta-binomial-1.Rmd’ using rmarkdown + Quitting from lines 142-147 (beta-binomial-1.Rmd) + Error: processing vignette 'beta-binomial-1.Rmd' failed with diagnostics: + could not find function "discrete_range" + --- failed re-building ‘beta-binomial-1.Rmd’ + + --- re-building ‘gamma-1.Rmd’ using rmarkdown + Quitting from lines 144-149 (gamma-1.Rmd) + Error: processing vignette 'gamma-1.Rmd' failed with diagnostics: + ... + --- re-building ‘weights-1-simulate.Rmd’ using rmarkdown + --- finished re-building ‘weights-1-simulate.Rmd’ + + SUMMARY: processing the following files failed: + ‘beta-binomial-1.Rmd’ ‘gamma-1.Rmd’ ‘negative-binomial-1.Rmd’ + ‘pied-flycatchers-1.Rmd’ ‘pied-flycatchers-2.Rmd’ + ‘pied-flycatchers-3.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# DriveML + +
+ +* Version: 0.1.5 +* GitHub: https://github.com/daya6489/DriveML +* Source code: https://github.com/cran/DriveML +* Date/Publication: 2022-12-02 11:20:02 UTC +* Number of recursive dependencies: 119 + +Run `cloud_details(, "DriveML")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: ... - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 36 ] - Error: Test failures - Execution halted + --- re-building ‘DriveML.Rmd’ using rmarkdown + Quitting from lines 341-343 (DriveML.Rmd) + Error: processing vignette 'DriveML.Rmd' failed with diagnostics: + could not find function "discrete_range" + --- failed re-building ‘DriveML.Rmd’ + + SUMMARY: processing the following file failed: + ‘DriveML.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 8 marked UTF-8 strings + ``` + +# EcoEnsemble + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/EcoEnsemble +* Date/Publication: 2023-03-17 15:00:05 UTC +* Number of recursive dependencies: 87 + +Run `cloud_details(, "EcoEnsemble")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘EcoEnsemble.Rmd’ using rmarkdown + Quitting from lines 722-723 (EcoEnsemble.Rmd) + Error: processing vignette 'EcoEnsemble.Rmd' failed with diagnostics: + could not find function "discrete_range" + --- failed re-building ‘EcoEnsemble.Rmd’ + + --- re-building ‘ExploringPriors.Rmd’ using rmarkdown + --- finished re-building ‘ExploringPriors.Rmd’ + + --- re-building ‘SyntheticData.Rmd’ using rmarkdown + --- finished re-building ‘SyntheticData.Rmd’ + + SUMMARY: processing the following file failed: + ‘EcoEnsemble.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 195.8Mb + sub-directories of 1Mb or more: + libs 194.8Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘RcppParallel’ ‘rstantools’ + All declared Imports should be used. + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +# ggh4x + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/teunbrand/ggh4x +* Source code: https://github.com/cran/ggh4x +* Date/Publication: 2022-11-09 08:40:24 UTC +* Number of recursive dependencies: 79 + +Run `cloud_details(, "ggh4x")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggh4x’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ggh4x/new/ggh4x.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ggh4x’ ... +** package ‘ggh4x’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in get(x, envir = ns, inherits = FALSE) : + object 'continuous_range' not found +Error: unable to load R code in package ‘ggh4x’ +Execution halted +ERROR: lazy loading failed for package ‘ggh4x’ +* removing ‘/tmp/workdir/ggh4x/new/ggh4x.Rcheck/ggh4x’ + + +``` +### CRAN + +``` +* installing *source* package ‘ggh4x’ ... +** package ‘ggh4x’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (ggh4x) + + +``` +# ggtern + +
+ +* Version: 3.4.1 +* GitHub: NA +* Source code: https://github.com/cran/ggtern +* Date/Publication: 2022-12-06 03:10:02 UTC +* Number of recursive dependencies: 42 + +Run `cloud_details(, "ggtern")` for more info + +
+ +## Newly broken + +* checking Rd files ... WARNING + ``` + prepare_Rd: the condition has length > 1 and only the first element will be used ``` ## In both * checking package dependencies ... NOTE ``` - Package which this enhances but not available for checking: ‘workflowr’ + Package which this enhances but not available for checking: ‘sp’ + ``` + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘chemometrics’ + ``` + +# siland + +
+ +* Version: 2.0.5 +* GitHub: NA +* Source code: https://github.com/cran/siland +* Date/Publication: 2021-01-27 20:10:03 UTC +* Number of recursive dependencies: 108 + +Run `cloud_details(, "siland")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘siland.Rmd’ using rmarkdown + Quitting from lines 155-156 (siland.Rmd) + Error: processing vignette 'siland.Rmd' failed with diagnostics: + could not find function "discrete_range" + --- failed re-building ‘siland.Rmd’ + + SUMMARY: processing the following file failed: + ‘siland.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# TCIU + +
+ +* Version: 1.2.2 +* GitHub: https://github.com/SOCR/TCIU +* Source code: https://github.com/cran/TCIU +* Date/Publication: 2023-02-27 20:02:30 UTC +* Number of recursive dependencies: 171 + +Run `cloud_details(, "TCIU")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘tciu-LT-kimesurface.Rmd’ using rmarkdown + Quitting from lines 159-160 (tciu-LT-kimesurface.Rmd) + Error: processing vignette 'tciu-LT-kimesurface.Rmd' failed with diagnostics: + could not find function "discrete_range" + --- failed re-building ‘tciu-LT-kimesurface.Rmd’ + + --- re-building ‘tciu-fMRI-analytics.Rmd’ using rmarkdown + --- finished re-building ‘tciu-fMRI-analytics.Rmd’ + + SUMMARY: processing the following file failed: + ‘tciu-LT-kimesurface.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 12.9Mb + sub-directories of 1Mb or more: + doc 11.8Mb ``` # xpose
-* Version: 0.4.14 +* Version: 0.4.15 * GitHub: https://github.com/UUPharmacometrics/xpose * Source code: https://github.com/cran/xpose -* Date/Publication: 2022-11-07 22:30:02 UTC -* Number of recursive dependencies: 108 +* Date/Publication: 2023-02-25 15:30:02 UTC +* Number of recursive dependencies: 109 Run `cloud_details(, "xpose")` for more info @@ -65,18 +376,18 @@ Run `cloud_details(, "xpose")` for more info Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ▆ - 1. ├─testthat::expect_error(...) at test-xpose_save.R:33:2 + 1. ├─testthat::expect_error(...) at test-xpose_save.R:27:2 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) - 6. └─xpose::xpose_save(plot = plot, file = paths_1) + 6. └─xpose::xpose_save(plot = plot, file = paths_1[3]) 7. └─ggplot2::ggsave(...) 8. └─ggplot2:::plot_dev(device, filename, dpi = dpi) - 9. └─cli::cli_abort("Unknown graphics device {.val {device}}", call = call) + 9. └─cli::cli_abort(...) 10. └─rlang::abort(...) - [ FAIL 1 | WARN 3 | SKIP 7 | PASS 521 ] + [ FAIL 1 | WARN 0 | SKIP 7 | PASS 520 ] Error: Test failures Execution halted ```