From d0377e139855252e15b57d7699aa6f5abb510996 Mon Sep 17 00:00:00 2001 From: Curtis Kapsak Date: Mon, 24 Jun 2024 11:55:07 -0400 Subject: [PATCH] [all workflows] upgrade PHB version to 2.1.0 (#517) * upgrade PHB version to 2.1.0 * update CI --- tasks/task_versioning.wdl | 2 +- tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml | 2 +- tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/tasks/task_versioning.wdl b/tasks/task_versioning.wdl index 854468f90..d87d5f42c 100644 --- a/tasks/task_versioning.wdl +++ b/tasks/task_versioning.wdl @@ -9,7 +9,7 @@ task version_capture { volatile: true } command { - PHB_Version="PHB v2.0.1" + PHB_Version="PHB v2.1.0" ~{default='' 'export TZ=' + timezone} date +"%Y-%m-%d" > TODAY echo "$PHB_Version" > PHB_VERSION diff --git a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml index e663adb0e..9e1f30bc5 100644 --- a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml +++ b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_pe.yml @@ -623,7 +623,7 @@ - path: miniwdl_run/wdl/tasks/species_typing/multi/task_ts_mlst.wdl md5sum: cfc0b5212cdf70300497bce58d295539 - path: miniwdl_run/wdl/tasks/task_versioning.wdl - md5sum: a7fd1295e5759277b3a1e43253881b12 + md5sum: c20b66eea46148f4618abc038d3877b7 - path: miniwdl_run/wdl/tasks/taxon_id/task_gambit.wdl md5sum: f4826d61709d0d44b921a821d0d5706f - path: miniwdl_run/wdl/tasks/taxon_id/contamination/task_kraken2.wdl diff --git a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml index 155834b42..ff940a14f 100644 --- a/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml +++ b/tests/workflows/theiaprok/test_wf_theiaprok_illumina_se.yml @@ -586,7 +586,7 @@ - path: miniwdl_run/wdl/tasks/species_typing/multi/task_ts_mlst.wdl md5sum: cfc0b5212cdf70300497bce58d295539 - path: miniwdl_run/wdl/tasks/task_versioning.wdl - md5sum: a7fd1295e5759277b3a1e43253881b12 + md5sum: c20b66eea46148f4618abc038d3877b7 - path: miniwdl_run/wdl/tasks/taxon_id/task_gambit.wdl md5sum: f4826d61709d0d44b921a821d0d5706f - path: miniwdl_run/wdl/tasks/taxon_id/contamination/task_kraken2.wdl