From ec392dcd10d26c1067ca1b94017ddc7b8233beea Mon Sep 17 00:00:00 2001
From: Cody O'Donnell <ctodonnell@lbl.gov>
Date: Tue, 19 Mar 2024 10:34:06 -0700
Subject: [PATCH] Revert data sources

---
 .DS_Store                                     | Bin 0 -> 6148 bytes
 .../genomes.tsv => Current_Genomes.tsv}       |   0
 data/Current_Genomes_original.tsv             | 319 ++++++++++++++++++
 .../contributor_datasets.json                 |   0
 .../datasets.json                             |   0
 data/default/run-computation/inputs.json      |  42 ---
 data/default/run-computation/list.json        |  37 --
 .../run-computation/results_bar_chart.json    |  14 -
 .../run-computation/results_line_chart.json   |  12 -
 .../run-computation/results_table.json        |  42 ---
 .../experiment_detail.json                    |   0
 .../monitor-activities => }/experiments.json  |   0
 .../{default/compare-data => }/scenarios.json |   0
 13 files changed, 319 insertions(+), 147 deletions(-)
 create mode 100644 .DS_Store
 rename data/{default/explore-data/genomes.tsv => Current_Genomes.tsv} (100%)
 create mode 100644 data/Current_Genomes_original.tsv
 rename data/{default/contribute-data => }/contributor_datasets.json (100%)
 rename data/{default/search-data-repositories => }/datasets.json (100%)
 delete mode 100644 data/default/run-computation/inputs.json
 delete mode 100644 data/default/run-computation/list.json
 delete mode 100644 data/default/run-computation/results_bar_chart.json
 delete mode 100644 data/default/run-computation/results_line_chart.json
 delete mode 100644 data/default/run-computation/results_table.json
 rename data/{default/monitor-activities => }/experiment_detail.json (100%)
 rename data/{default/monitor-activities => }/experiments.json (100%)
 rename data/{default/compare-data => }/scenarios.json (100%)

diff --git a/.DS_Store b/.DS_Store
new file mode 100644
index 0000000000000000000000000000000000000000..5008ddfcf53c02e82d7eee2e57c38e5672ef89f6
GIT binary patch
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diff --git a/data/default/explore-data/genomes.tsv b/data/Current_Genomes.tsv
similarity index 100%
rename from data/default/explore-data/genomes.tsv
rename to data/Current_Genomes.tsv
diff --git a/data/Current_Genomes_original.tsv b/data/Current_Genomes_original.tsv
new file mode 100644
index 00000000..17da3b7f
--- /dev/null
+++ b/data/Current_Genomes_original.tsv
@@ -0,0 +1,319 @@
+Organism	Proteome_ID	Assembly	Annotation	Common Name	Euk. BUSCO %	Emb. BUSCO %	Data Usage Policy
+Acorus americanus v1.1 (https://phytozome-next.jgi.doe.gov/info/Aamericanus_v1_1)	586	JGI	JGI	sweetflag	98.0	94.2	restricted
+Agave tequilana var. Weber's Blue HAP1 v2.1 (https://phytozome-next.jgi.doe.gov/info/Atequilanavar_WebersBlueHAP1_v2_1)	790	JGI	JGI	Weber's Blue agave	98.3	97.0	restricted
+Agave tequilana var. Weber's Blue HAP2 v2.1 (https://phytozome-next.jgi.doe.gov/info/Atequilanavar_WebersBlueHAP2_v2_1)	791	JGI	JGI	Weber's Blue agave	98.3	97.4	restricted
+Alyssum linifolium v1.1 (https://phytozome-next.jgi.doe.gov/info/Alinifolium_v1_1)	472	JGI	JGI		98.7	98.5	restricted
+Amaranthus hypochondriacus v2.1 (https://phytozome-next.jgi.doe.gov/info/Ahypochondriacus_v2_1)	459	BYU	BYU	grain amaranth	91.7	77.6	unrestricted
+Amborella trichopoda v1.0 (https://phytozome-next.jgi.doe.gov/info/Atrichopoda_v1_0)	291	AGP	AGP	amborella	94.4	84.5	unrestricted
+Amborella trichopoda var. SantaCruz_75 HAP1 v2.1 (https://phytozome-next.jgi.doe.gov/info/Atrichopodavar_SantaCruz_75HAP1_v2_1)	727	JGI	JGI		99.0	93.5	restricted
+Amborella trichopoda var. SantaCruz_75 HAP2 v2.1 (https://phytozome-next.jgi.doe.gov/info/Atrichopodavar_SantaCruz_75HAP2_v2_1)	728	JGI	JGI		99.0	94.0	restricted
+Anacardium occidentale v0.9 (https://phytozome-next.jgi.doe.gov/info/Aoccidentale_v0_9)	449	JGI	JGI	cashew	96.7	91.1	restricted
+Ananas comosus v3 (https://phytozome-next.jgi.doe.gov/info/Acomosus_v3)	321	FAFU/UIUC	FAFU/UIUC	pineapple	92.1	89.3	unrestricted
+Andropogon gerardi HAP1 v1.1 (https://phytozome-next.jgi.doe.gov/info/AgerardiHAP1_v1_1)	783	JGI	JGI	Big bluestem	98.7	99.7	restricted
+Andropogon gerardi HAP2 v1.1 (https://phytozome-next.jgi.doe.gov/info/AgerardiHAP2_v1_1)	784	JGI	JGI	Big bluestem	98.7	99.7	restricted
+Aquilegia coerulea v3.1 (https://phytozome-next.jgi.doe.gov/info/Acoerulea_v3_1)	322	JGI	JGI	Colorado blue columbine	98.7	95.8	unrestricted
+Arabidopsis halleri v1.1 (https://phytozome-next.jgi.doe.gov/info/Ahalleri_v1_1)	264	JGI	JGI		89.4	85.9	restricted
+Arabidopsis halleri v2.1.0 (https://phytozome-next.jgi.doe.gov/info/Ahalleri_v2_1_0)	765	MPIB	MGPP-RUB		98.3	94.0	unrestricted
+Arabidopsis lyrata v2.1 (https://phytozome-next.jgi.doe.gov/info/Alyrata_v2_1)	384	JGI	MPIPZ	Lyrate rockcress	98.0	98.2	unrestricted
+Arabidopsis thaliana TAIR10 (https://phytozome-next.jgi.doe.gov/info/Athaliana_TAIR10)	167	TAIR	TAIR	thale cress	99.0	99.3	unrestricted
+Arabidopsis thaliana Araport11 (https://phytozome-next.jgi.doe.gov/info/Athaliana_Araport11)	447	TAIR	Araport	thale cress	98.7	99.3	unrestricted
+Arachis hypogaea v1.0 (https://phytozome-next.jgi.doe.gov/info/Ahypogaea_v1_0)	530	PeanutBase	PeanutBase	peanut	97.0	92.8	unrestricted
+Asparagus officinalis V1.1 (https://phytozome-next.jgi.doe.gov/info/Aofficinalis_V1_1)	498	UGA	UGA	garden asparagus	88.8	79.0	unrestricted
+Beta vulgaris EL10_1.0 (https://phytozome-next.jgi.doe.gov/info/Bvulgaris_EL10_1_0)	548	MSU	MSU	beet	94.7	89.2	unrestricted
+Beta vulgaris ssp. vulgaris EL10.2_2 (https://phytozome-next.jgi.doe.gov/info/Bvulgarisssp_vulgaris_EL10_2_2)	782	USDA	JGI	sugar beet EL10	96.7	92.2	unrestricted
+Betula platyphylla v1.1 (https://phytozome-next.jgi.doe.gov/info/Bplatyphylla_v1_1)	679	NEFU	NEFU	Asian white birch	93.7	92.4	unrestricted
+Boechera stricta v1.2 (https://phytozome-next.jgi.doe.gov/info/Bstricta_v1_2)	278	JGI	JGI	Drummond's rockcress	96.0	97.4	unrestricted
+Botryococcus braunii v2.1 (https://phytozome-next.jgi.doe.gov/info/Bbraunii_v2_1)	502	JGI	JGI		80.5	22.6	restricted
+Brachypodium arbuscula BARB1 v3.1 (https://phytozome-next.jgi.doe.gov/info/BarbusculaBARB1_v3_1)	720	JGI	JGI		98.3	99.0	restricted
+Brachypodium distachyon v3.1 (https://phytozome-next.jgi.doe.gov/info/Bdistachyon_v3_1)	314	JGI	JGI	purple false brome	98.3	98.6	unrestricted
+Brachypodium distachyon v2.1 (https://phytozome-next.jgi.doe.gov/info/Bdistachyon_v2_1)	283	JGI	JGI	purple false brome	98.3	98.3	unrestricted
+Brachypodium distachyon v3.2 (https://phytozome-next.jgi.doe.gov/info/Bdistachyon_v3_2)	556	JGI	JGI	purple false brome	98.3	99.3	restricted
+Brachypodium distachyon ABR2 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR2_v1)	337	JGI	JGI	purple false brome	98.0	97.4	unrestricted
+Brachypodium distachyon ABR3 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR3_v1)	343	JGI	JGI	purple false brome	98.7	97.4	unrestricted
+Brachypodium distachyon ABR4 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR4_v1)	364	JGI	JGI	purple false brome	97.7	97.2	unrestricted
+Brachypodium distachyon ABR5 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR5_v1)	379	JGI	JGI	purple false brome	97.4	96.4	unrestricted
+Brachypodium distachyon ABR6 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR6_v1)	336	JGI	JGI	purple false brome	98.0	97.9	unrestricted
+Brachypodium distachyon ABR7 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR7_v1)	369	JGI	JGI	purple false brome	97.7	98.1	unrestricted
+Brachypodium distachyon ABR8 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR8_v1)	356	JGI	JGI	purple false brome	93.1	91.5	unrestricted
+Brachypodium distachyon ABR9 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonABR9_v1)	333	JGI	JGI	purple false brome	97.7	96.8	unrestricted
+Brachypodium distachyon Adi-10 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonAdi_10_v1)	381	JGI	JGI	purple false brome	94.4	84.7	unrestricted
+Brachypodium distachyon Adi-12 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonAdi_12_v1)	359	JGI	JGI	purple false brome	96.7	95.8	unrestricted
+Brachypodium distachyon Adi-2 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonAdi_2_v1)	372	JGI	JGI	purple false brome	98.0	97.6	unrestricted
+Brachypodium distachyon Arn1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonArn1_v1)	355	JGI	JGI	purple false brome	97.4	97.8	unrestricted
+Brachypodium distachyon Bd1-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd1_1_v1)	349	JGI	JGI	purple false brome	94.1	96.1	unrestricted
+Brachypodium distachyon Bd1-1 v1.1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd1_1_v1_1)	549	JGI	JGI	purple false brome	98.7	99.4	restricted
+Brachypodium distachyon Bd18-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd18_1_v1)	362	JGI	JGI	purple false brome	98.0	98.4	unrestricted
+Brachypodium distachyon Bd2-3 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd2_3_v1)	353	JGI	JGI	purple false brome	97.7	95.4	unrestricted
+Brachypodium distachyon Bd21 AnntCtrl v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd21AnntCtrl_v1)	331	JGI	JGI	purple false brome	97.7	98.1	unrestricted
+Brachypodium distachyon Bd21 AsmbCtrl v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd21AsmbCtrl_v1)	361	JGI	JGI	purple false brome	97.7	97.1	unrestricted
+Brachypodium distachyon Bd21-3 v1.1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd21_3_v1_1)	460	JGI	JGI	purple false brome	98.0	98.0	restricted
+Brachypodium distachyon Bd21-3 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd21_3_v1)	378	JGI	JGI	purple false brome	97.4	96.7	unrestricted
+Brachypodium distachyon Bd21-3 v1.2 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd21_3_v1_2)	537	JGI	JGI	purple false brome	98.3	99.0	restricted
+Brachypodium distachyon Bd29-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd29_1_v1)	346	JGI	JGI	purple false brome	94.7	93.6	unrestricted
+Brachypodium distachyon Bd3-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd3_1_v1)	328	JGI	JGI	purple false brome	86.8	85.6	unrestricted
+Brachypodium distachyon Bd30-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd30_1_v1)	344	JGI	JGI	purple false brome	97.0	96.0	unrestricted
+Brachypodium distachyon Bd30-1 v1.1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBd30_1_v1_1)	515	JGI	JGI	purple false brome	98.1	98.1	restricted
+Brachypodium distachyon BdTR10c v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR10c_v1)	374	JGI	JGI	purple false brome	97.0	93.3	unrestricted
+Brachypodium distachyon BdTR11a v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR11a_v1)	380	JGI	JGI	purple false brome	98.0	95.9	unrestricted
+Brachypodium distachyon BdTR11g v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR11g_v1)	357	JGI	JGI	purple false brome	98.3	97.6	unrestricted
+Brachypodium distachyon BdTR11i v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR11i_v1)	363	JGI	JGI	purple false brome	98.0	97.4	unrestricted
+Brachypodium distachyon BdTR12c v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR12c_v1)	352	JGI	JGI	purple false brome	96.7	94.8	unrestricted
+Brachypodium distachyon BdTR13a v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR13a_v1)	334	JGI	JGI	purple false brome	98.7	97.8	unrestricted
+Brachypodium distachyon BdTR13c v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR13c_v1)	365	JGI	JGI	purple false brome	96.7	95.1	unrestricted
+Brachypodium distachyon BdTR1i v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR1i_v1)	345	JGI	JGI	purple false brome	98.3	97.8	unrestricted
+Brachypodium distachyon BdTR2b v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR2b_v1)	376	JGI	JGI	purple false brome	96.7	96.7	unrestricted
+Brachypodium distachyon BdTR2g v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR2g_v1)	367	JGI	JGI	purple false brome	95.7	95.3	unrestricted
+Brachypodium distachyon BdTR3c v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR3c_v1)	354	JGI	JGI	purple false brome	98.0	98.0	unrestricted
+Brachypodium distachyon BdTR5i v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR5i_v1)	370	JGI	JGI	purple false brome	96.4	94.1	unrestricted
+Brachypodium distachyon BdTR7a v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR7a_v1)	329	JGI	JGI	purple false brome	98.0	97.2	unrestricted
+Brachypodium distachyon BdTR8i v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR8i_v1)	348	JGI	JGI	purple false brome	97.7	97.2	unrestricted
+Brachypodium distachyon BdTR9k v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBdTR9k_v1)	358	JGI	JGI	purple false brome	96.0	94.5	unrestricted
+Brachypodium distachyon Bis-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonBis_1_v1)	338	JGI	JGI	purple false brome	97.7	96.9	unrestricted
+Brachypodium distachyon Foz1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonFoz1_v1)	366	JGI	JGI	purple false brome	98.3	96.8	unrestricted
+Brachypodium distachyon Gaz-8 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonGaz_8_v1)	339	JGI	JGI	purple false brome	88.8	75.0	unrestricted
+Brachypodium distachyon Jer1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonJer1_v1)	375	JGI	JGI	purple false brome	97.7	96.5	unrestricted
+Brachypodium distachyon Kah-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonKah_1_v1)	351	JGI	JGI	purple false brome	89.4	86.5	unrestricted
+Brachypodium distachyon Kah-5 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonKah_5_v1)	342	JGI	JGI	purple false brome	98.3	97.8	unrestricted
+Brachypodium distachyon Koz-1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonKoz_1_v1)	330	JGI	JGI	purple false brome	98.0	98.3	unrestricted
+Brachypodium distachyon Koz-3 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonKoz_3_v1)	368	JGI	JGI	purple false brome	94.7	95.6	unrestricted
+Brachypodium distachyon Luc1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonLuc1_v1)	347	JGI	JGI	purple false brome	98.3	97.8	unrestricted
+Brachypodium distachyon Mig3 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonMig3_v1)	377	JGI	JGI	purple false brome	98.0	97.4	unrestricted
+Brachypodium distachyon Mon3 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonMon3_v1)	350	JGI	JGI	purple false brome	98.0	96.6	unrestricted
+Brachypodium distachyon Mur1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonMur1_v1)	373	JGI	JGI	purple false brome	95.7	96.2	unrestricted
+Brachypodium distachyon Pangenome v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonPangenome_v1)	335	JGI	JGI	purple false brome	98.7	98.7	unrestricted
+Brachypodium distachyon Per1 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonPer1_v1)	326	JGI	JGI	purple false brome	98.3	97.8	unrestricted
+Brachypodium distachyon Ron2 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonRon2_v1)	360	JGI	JGI	purple false brome	97.4	97.6	unrestricted
+Brachypodium distachyon S8iic v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonS8iic_v1)	340	JGI	JGI	purple false brome	97.7	97.5	unrestricted
+Brachypodium distachyon Sig2 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonSig2_v1)	371	JGI	JGI	purple false brome	98.7	96.7	unrestricted
+Brachypodium distachyon Tek-2 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonTek_2_v1)	341	JGI	JGI	purple false brome	96.7	96.7	unrestricted
+Brachypodium distachyon Tek-4 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonTek_4_v1)	332	JGI	JGI	purple false brome	82.2	75.1	unrestricted
+Brachypodium distachyon Uni2 v1 (https://phytozome-next.jgi.doe.gov/info/BdistachyonUni2_v1)	327	JGI	JGI	purple false brome	97.7	97.5	unrestricted
+Brachypodium hybridum v1.1 (https://phytozome-next.jgi.doe.gov/info/Bhybridum_v1_1)	463	JGI	JGI		97.7	99.4	unrestricted
+Brachypodium hybridum Bhyb26 v2.1 (https://phytozome-next.jgi.doe.gov/info/BhybridumBhyb26_v2_1)	693	JGI	JGI		98.3	99.7	restricted
+Brachypodium mexicanum v2.1 (https://phytozome-next.jgi.doe.gov/info/Bmexicanum_v2_1)	813		JGI		98.7	99.5	unrestricted
+Brachypodium mexicanum v1.1 (https://phytozome-next.jgi.doe.gov/info/Bmexicanum_v1_1)	577	JGI	JGI		98.7	99.5	unrestricted
+Brachypodium stacei v1.1 (https://phytozome-next.jgi.doe.gov/info/Bstacei_v1_1)	316	JGI	JGI		98.0	98.6	unrestricted
+Brachypodium sylvaticum v1.1 (https://phytozome-next.jgi.doe.gov/info/Bsylvaticum_v1_1)	490	JGI	JGI		98.3	97.2	restricted
+Brachypodium sylvaticum Ain-1 v2.1 (https://phytozome-next.jgi.doe.gov/info/BsylvaticumAin_1_v2_1)	721	JGI	JGI		97.7	99.1	restricted
+Brassica oleracea capitata v1.0 (https://phytozome-next.jgi.doe.gov/info/Boleraceacapitata_v1_0)	446	OCRI	OCRI	cabbage	88.8	78.4	unrestricted
+Brassica rapa FPsc v1.3 (https://phytozome-next.jgi.doe.gov/info/BrapaFPsc_v1_3)	277	JGI	JGI	turnip mustard	97.7	96.9	unrestricted
+Brassica rapa ssp. trilocularis R500 v2.1 (https://phytozome-next.jgi.doe.gov/info/Brapassp_trilocularisR500_v2_1)	795	JGI	JGI		98.3	99.0	restricted
+Cakile maritima v1.1 (https://phytozome-next.jgi.doe.gov/info/Cmaritima_v1_1)	481	JGI	JGI	european searocket	98.3	97.9	restricted
+Capsella grandiflora v1.1 (https://phytozome-next.jgi.doe.gov/info/Cgrandiflora_v1_1)	266	JGI	JGI		94.1	94.6	unrestricted
+Capsella rubella v1.1 (https://phytozome-next.jgi.doe.gov/info/Crubella_v1_1)	474	JGI	JGI	Pink shepherd's purse	98.3	97.2	unrestricted
+Carica papaya ASGPBv0.4 (https://phytozome-next.jgi.doe.gov/info/Cpapaya_ASGPBv0_4)	113	ASGPB	ASGPB	papaya	82.5	72.0	unrestricted
+Carya illinoinensis v1.1 (https://phytozome-next.jgi.doe.gov/info/Cillinoinensis_v1_1)	573	HA	JGI	pecan	98.7	97.8	unrestricted
+Carya illinoinensis Elliott v1.1 (https://phytozome-next.jgi.doe.gov/info/CillinoinensisElliott_v1_1)	562	HA	HA	pecan	96.4	94.4	unrestricted
+Carya illinoinensis Lakota v1.1 (https://phytozome-next.jgi.doe.gov/info/CillinoinensisLakota_v1_1)	561	HA	HA	pecan	98.3	97.5	unrestricted
+Carya illinoinensis Pawnee v1.1 (https://phytozome-next.jgi.doe.gov/info/CillinoinensisPawnee_v1_1)	588	HA	HA	pecan	98.0	95.9	unrestricted
+Castanea dentata v1.1 (https://phytozome-next.jgi.doe.gov/info/Cdentata_v1_1)	673	HA	HA	American chestnut	98.3	98.7	restricted
+Castanea mollissima Mahogany HAP1 v1.1 (https://phytozome-next.jgi.doe.gov/info/CmollissimaMahoganyHAP1_v1_1)	733	HA	HA	Chinese chestnut	97.7	97.6	restricted
+Castanea mollissima Mahogany HAP2 v1.1 (https://phytozome-next.jgi.doe.gov/info/CmollissimaMahoganyHAP2_v1_1)	729	HA	HA	Chinese chestnut	97.7	97.4	restricted
+Castanea mollissima Nanking HAP1 v1.1 (https://phytozome-next.jgi.doe.gov/info/CmollissimaNankingHAP1_v1_1)	732	HA	HA	Chinese chestnut	98.0	98.1	restricted
+Castanea mollissima Nanking HAP2 v1.1 (https://phytozome-next.jgi.doe.gov/info/CmollissimaNankingHAP2_v1_1)	731	HA	HA	Chinese chestnut	97.7	97.9	restricted
+Caulanthus amplexicaulis v1.1 (https://phytozome-next.jgi.doe.gov/info/Camplexicaulis_v1_1)	470	JGI	JGI	claspingleaf wild cabbage	98.7	98.8	restricted
+Ceratodon purpureus GG1 v1.1 (https://phytozome-next.jgi.doe.gov/info/CpurpureusGG1_v1_1)	539	JGI	JGI		96.7	69.1	unrestricted
+Ceratodon purpureus R40 v1.1 (https://phytozome-next.jgi.doe.gov/info/CpurpureusR40_v1_1)	538	JGI	JGI		96.4	69.0	unrestricted
+Ceratopteris richardii v2.1 (https://phytozome-next.jgi.doe.gov/info/Crichardii_v2_1)	676	JGI	JGI		98.0	71.0	unrestricted
+Cercis canadensis V3.1 (https://phytozome-next.jgi.doe.gov/info/Ccanadensis_V3_1)	705	JGI	JGI	eastern redbud	98.3	99.0	restricted
+Cercis canadensis HAP2 V3.1 (https://phytozome-next.jgi.doe.gov/info/CcanadensisHAP2_V3_1)	706	JGI	JGI	eastern redbud	98.0	99.0	restricted
+Chasmanthium laxum v1.1 (https://phytozome-next.jgi.doe.gov/info/Claxum_v1_1)	690	JGI	JGI	Slender wood oats	97.4	98.1	restricted
+Chenopodium quinoa v1.0 (https://phytozome-next.jgi.doe.gov/info/Cquinoa_v1_0)	392	KAUST	KAUST	quinoa	96.0	90.6	unrestricted
+Chlamydomonas reinhardtii v5.6 (https://phytozome-next.jgi.doe.gov/info/Creinhardtii_v5_6)	281	JGI	JGI	green algae	96.0	27.6	unrestricted
+Chlamydomonas reinhardtii CC-4532 v6.1 (https://phytozome-next.jgi.doe.gov/info/CreinhardtiiCC_4532_v6_1)	707	JGI	JGI	green algae	97.0	28.5	unrestricted
+Chromochloris zofingiensis v5.2.3.2 (https://phytozome-next.jgi.doe.gov/info/Czofingiensis_v5_2_3_2)	461	UCLA	UCLA		84.5	27.0	unrestricted
+Cicer arietinum v1.0 (https://phytozome-next.jgi.doe.gov/info/Carietinum_v1_0)	492	CGIAR	CGIAR	chickpea	95.4	89.6	unrestricted
+Cinnamomum kanehirae v3 (https://phytozome-next.jgi.doe.gov/info/Ckanehirae_v3)	531	BRCAS	BRCAS	stout camphor tree	93.1	89.8	unrestricted
+Citrus clementina v1.0 (https://phytozome-next.jgi.doe.gov/info/Cclementina_v1_0)	182	JGI	JGI	clementine	96.7	94.6	unrestricted
+Citrus sinensis v1.1 (https://phytozome-next.jgi.doe.gov/info/Csinensis_v1_1)	154	JGI	JGI	sweet orange	91.4	87.2	unrestricted
+Cleome violacea v1.1 (https://phytozome-next.jgi.doe.gov/info/Cviolacea_v1_1)	484	JGI	JGI	spider plant	98.7	97.6	restricted
+Cleome violacea v2.1 (https://phytozome-next.jgi.doe.gov/info/Cviolacea_v2_1)	585	JGI	JGI	spider plant	98.7	98.1	restricted
+Coccomyxa subellipsoidea C-169 v2.0 (https://phytozome-next.jgi.doe.gov/info/CsubellipsoideaC_169_v2_0)	227	JGI.FG	JGI.FG		89.1	26.5	unrestricted
+Coffea arabica v0.5 (https://phytozome-next.jgi.doe.gov/info/Carabica_v0_5)	453	UCD	UCD	coffee	98.3	94.8	restricted
+Corylus americana var. rush v1.1 (https://phytozome-next.jgi.doe.gov/info/Camericanavar_rush_v1_1)	835	JGI	JGI	American hazelnut Rush	98.7	98.8	unrestricted
+Corylus americana var. winkler v1.1 (https://phytozome-next.jgi.doe.gov/info/Camericanavar_winkler_v1_1)	834	JGI	JGI	American hazelnut Winkler	96.7	95.1	unrestricted
+Corymbia citriodora v2.1 (https://phytozome-next.jgi.doe.gov/info/Ccitriodora_v2_1)	507	JGI	JGI	lemon-scented gum	95.1	95.1	unrestricted
+Crambe hispanica v1.1 (https://phytozome-next.jgi.doe.gov/info/Chispanica_v1_1)	488	JGI	JGI		98.3	97.8	restricted
+Cucumis sativus v1.0 (https://phytozome-next.jgi.doe.gov/info/Csativus_v1_0)	122	Roche/JGI	Roche/JGI	cucumber	95.0	89.0	unrestricted
+Daucus carota v2.0 (https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0)	388	WISC	WISC	carrot	92.0	83.2	unrestricted
+Descurainia sophioides v1.1 (https://phytozome-next.jgi.doe.gov/info/Dsophioides_v1_1)	482	JGI	JGI	northern tansymustard	98.0	96.5	restricted
+Dioscorea alata v1.1 (https://phytozome-next.jgi.doe.gov/info/Dalata_v1_1)	504	JGI	JGI	yam	88.1	79.5	unrestricted
+Dioscorea alata v2.1 (https://phytozome-next.jgi.doe.gov/info/Dalata_v2_1)	550	UC Berkeley	JGI	yam	96.4	94.9	restricted
+Diphasiastrum complanatum v3.1 (https://phytozome-next.jgi.doe.gov/info/Dcomplanatum_v3_1)	723	JGI	JGI		97.4	76.5	restricted
+Diptychocarpus strictus v1.1 (https://phytozome-next.jgi.doe.gov/info/Dstrictus_v1_1)	489	JGI	JGI		98.0	93.9	restricted
+Diptychocarpus strictus v2.1 (https://phytozome-next.jgi.doe.gov/info/Dstrictus_v2_1)	582	JGI	JGI		98.7	94.6	restricted
+Dunaliella salina v1.0 (https://phytozome-next.jgi.doe.gov/info/Dsalina_v1_0)	325	JGI	JGI		77.6	18.6	unrestricted
+Eleusine coracana v1.1 (https://phytozome-next.jgi.doe.gov/info/Ecoracana_v1_1)	560	UGA/MIPS	UGA/MIPS	finger millet	97.0	94.9	unrestricted
+Eruca vesicaria v1.1 (https://phytozome-next.jgi.doe.gov/info/Evesicaria_v1_1)	487	JGI	JGI	arugula	99.3	98.3	restricted
+Eschscholzia californica var. Aurantiaca Orange King Plant1.1 HAP1 v1.1 (https://phytozome-next.jgi.doe.gov/info/Ecalifornicavar_AurantiacaOrangeKingPlant1_1HAP1_v1_1)	828	JGI	JGI	California poppy	98.7	97.6	restricted
+Eschscholzia californica var. Aurantiaca Orange King Plant1.1 HAP2 v1.1 (https://phytozome-next.jgi.doe.gov/info/Ecalifornicavar_AurantiacaOrangeKingPlant1_1HAP2_v1_1)	827	JGI	JGI	California poppy	98.7	97.4	restricted
+Eucalyptus grandis v2.0 (https://phytozome-next.jgi.doe.gov/info/Egrandis_v2_0)	297	JGI	JGI	eucalyptus	95.0	92.3	unrestricted
+Euclidium syriacum v1.1 (https://phytozome-next.jgi.doe.gov/info/Esyriacum_v1_1)	483	JGI	JGI	syrian mustard	97.7	96.7	restricted
+Eutrema salsugineum v1.0 (https://phytozome-next.jgi.doe.gov/info/Esalsugineum_v1_0)	173	JGI	JGI	salt cress	98.7	98.4	unrestricted
+Fragaria vesca v2.0.a2 (https://phytozome-next.jgi.doe.gov/info/Fvesca_v2_0_a2)	501	HAU	HAU	woodland strawberry	96.4	95.8	unrestricted
+Fragaria vesca v4.0.a2 (https://phytozome-next.jgi.doe.gov/info/Fvesca_v4_0_a2)	677	UCD	HAU	woodland strawberry	97.7	97.8	unrestricted
+Fragaria x ananassa v1.0.a1 (https://phytozome-next.jgi.doe.gov/info/Fxananassa_v1_0_a1)	675	UCD	UCD	strawberry	98.3	96.9	unrestricted
+Fragaria x ananassa Royal Royce v1.0 (https://phytozome-next.jgi.doe.gov/info/FxananassaRoyalRoyce_v1_0)	701	UCDAVIS	UCDAVIS	allo-octoploid strawberry	97.7	97.4	restricted
+Glycine max Wm82.a2.v1 (https://phytozome-next.jgi.doe.gov/info/Gmax_Wm82_a2_v1)	275	JGI	JGI	soybean	98.3	97.4	unrestricted
+Glycine max Wm82.a4.v1 (https://phytozome-next.jgi.doe.gov/info/Gmax_Wm82_a4_v1)	508	JGI	JGI	soybean	98.3	97.6	unrestricted
+Glycine max Fiskeby v1.1 (https://phytozome-next.jgi.doe.gov/info/GmaxFiskeby_v1_1)	678	HA	JGI	soybean	98.3	97.7	restricted
+Glycine max Lee v1.1 (https://phytozome-next.jgi.doe.gov/info/GmaxLee_v1_1)	510	JGI	JGI	soybean	97.3	97.3	restricted
+Glycine max Wm82 ISU-01 v2.1 (https://phytozome-next.jgi.doe.gov/info/GmaxWm82ISU_01_v2_1)	724	JGI	JGI		98.3	97.7	restricted
+Glycine soja v1.1 (https://phytozome-next.jgi.doe.gov/info/Gsoja_v1_1)	509	JGI	JGI	soybean	98.3	96.7	unrestricted
+Gossypium barbadense v1.1 (https://phytozome-next.jgi.doe.gov/info/Gbarbadense_v1_1)	526	HA	HA	cotton	99.0	98.2	unrestricted
+Gossypium darwinii v1.1 (https://phytozome-next.jgi.doe.gov/info/Gdarwinii_v1_1)	529	HA	HA	cotton	99.3	98.5	unrestricted
+Gossypium hirsutum v3.1 (https://phytozome-next.jgi.doe.gov/info/Ghirsutum_v3_1)	578	HA	HA	upland cotton	99.0	98.6	restricted
+Gossypium hirsutum v1.1 (https://phytozome-next.jgi.doe.gov/info/Ghirsutum_v1_1)	458	HA	HA	upland cotton	99.0	97.8	unrestricted
+Gossypium hirsutum v2.1 (https://phytozome-next.jgi.doe.gov/info/Ghirsutum_v2_1)	527	HA	HA	upland cotton	99.0	98.5	unrestricted
+Gossypium hirsutum CSX8308 v1.1 (https://phytozome-next.jgi.doe.gov/info/GhirsutumCSX8308_v1_1)	570	HA	HA	upland cotton	98.7	98.5	restricted
+Gossypium hirsutum Coker v1.1 (https://phytozome-next.jgi.doe.gov/info/GhirsutumCoker_v1_1)	698	HA	HA	upland cotton	99.0	98.7	restricted
+Gossypium hirsutum DeltaPearl v1.1 (https://phytozome-next.jgi.doe.gov/info/GhirsutumDeltaPearl_v1_1)	695	HA	HA	upland cotton	99.3	98.7	restricted
+Gossypium hirsutum FM958 v1.1 (https://phytozome-next.jgi.doe.gov/info/GhirsutumFM958_v1_1)	697	HA	HA	upland cotton	99.0	98.5	restricted
+Gossypium hirsutum UA48 v1.1 (https://phytozome-next.jgi.doe.gov/info/GhirsutumUA48_v1_1)	569	HA	HA	upland cotton	99.0	98.3	restricted
+Gossypium hirsutum UGA230 v1.1 (https://phytozome-next.jgi.doe.gov/info/GhirsutumUGA230_v1_1)	568	HA	HA	upland cotton	99.0	98.5	restricted
+Gossypium mustelinum v1.1 (https://phytozome-next.jgi.doe.gov/info/Gmustelinum_v1_1)	524	HA	HA	cotton	99.3	98.3	unrestricted
+Gossypium raimondii v2.1 (https://phytozome-next.jgi.doe.gov/info/Graimondii_v2_1)	221	JGI	JGI	cotton	98.3	97.4	unrestricted
+Gossypium tomentosum v1.1 (https://phytozome-next.jgi.doe.gov/info/Gtomentosum_v1_1)	525	HA	HA	cotton	99.3	98.6	unrestricted
+Helianthus annuus r1.2 (https://phytozome-next.jgi.doe.gov/info/Hannuus_r1_2)	494	INRA	INRA	sunflower	98.0	93.6	unrestricted
+Hordeum vulgare r1 (https://phytozome-next.jgi.doe.gov/info/Hvulgare_r1)	462	IBSC	IBSC	barley	91.4	84.7	unrestricted
+Hordeum vulgare Morex V3 (https://phytozome-next.jgi.doe.gov/info/HvulgareMorex_V3)	702	HA	IPK	Morex barley	92.1	94.7	unrestricted
+Hydrangea quercifolia v1.1 (https://phytozome-next.jgi.doe.gov/info/Hquercifolia_v1_1)	589	HA	HA	oakleaf hydrangea	96.7	93.1	restricted
+Iberis amara v1.1 (https://phytozome-next.jgi.doe.gov/info/Iamara_v1_1)	485	JGI	JGI	rocket candytuft	98.3	96.5	restricted
+Isatis tinctoria v1.1 (https://phytozome-next.jgi.doe.gov/info/Itinctoria_v1_1)	475	JGI	JGI	dyer's woad	98.0	96.8	restricted
+Joinvillea ascendens v1.1 (https://phytozome-next.jgi.doe.gov/info/Jascendens_v1_1)	587	JGI	JGI	`ohe	98.0	98.0	restricted
+Kalanchoe fedtschenkoi v1.1 (https://phytozome-next.jgi.doe.gov/info/Kfedtschenkoi_v1_1)	382	JGI	JGI	lavender scallops	96.7	89.5	unrestricted
+Kalanchoe laxiflora v1.1 (https://phytozome-next.jgi.doe.gov/info/Klaxiflora_v1_1)	309	JGI	JGI		98.7	94.3	restricted
+Kalanchoe laxiflora FTBG2000359A v3.1 (https://phytozome-next.jgi.doe.gov/info/KlaxifloraFTBG2000359A_v3_1)	699	JGI	JGI		98.7	93.2	restricted
+Lactuca sativa V8 (https://phytozome-next.jgi.doe.gov/info/Lsativa_V8)	467	UCDavis	UCDavis	lettuce	96.4	92.5	unrestricted
+Lens culinaris v1 (https://phytozome-next.jgi.doe.gov/info/Lculinaris_v1)	718	USask	USask		97.4	92.4	unrestricted
+Lens ervoides v1 (https://phytozome-next.jgi.doe.gov/info/Lervoides_v1)	719	USask	USask		96.7	92.7	unrestricted
+Lepidium sativum v1.1 (https://phytozome-next.jgi.doe.gov/info/Lsativum_v1_1)	478	JGI	JGI	garden cress	98.7	98.0	restricted
+Lindenbergia philippensis v1.1 (https://phytozome-next.jgi.doe.gov/info/Lphilippensis_v1_1)	689	JGI	JGI		98.0	96.7	restricted
+Linum usitatissimum v1.0 (https://phytozome-next.jgi.doe.gov/info/Lusitatissimum_v1_0)	200	BGI	BGI	flax	97.7	92.1	unrestricted
+Liriodendron tulipifera YP108A v1.1 (https://phytozome-next.jgi.doe.gov/info/LtulipiferaYP108A_v1_1)	766	JGI	JGI		98.0	98.3	restricted
+Liriodendron tulipifera YP108A alt v1.1 (https://phytozome-next.jgi.doe.gov/info/LtulipiferaYP108Aalt_v1_1)	767	JGI	JGI		95.7	94.7	restricted
+Lotus japonicus Lj1.0v1 (https://phytozome-next.jgi.doe.gov/info/Ljaponicus_Lj1_0v1)	571	HAU	HAU		98.3	96.7	unrestricted
+Lunaria annua v1.1 (https://phytozome-next.jgi.doe.gov/info/Lannua_v1_1)	476	JGI	JGI	annual honesty	98.7	97.6	restricted
+Lupinus albus v1 (https://phytozome-next.jgi.doe.gov/info/Lalbus_v1)	567	PeretLab	PeretLab	white lupine	97.0	95.0	unrestricted
+Malcolmia maritima v1.1 (https://phytozome-next.jgi.doe.gov/info/Mmaritima_v1_1)	477	JGI	JGI	Virginia stock	99.0	98.8	restricted
+Malus domestica v1.1 (https://phytozome-next.jgi.doe.gov/info/Mdomestica_v1_1)	491	AGE	AGE	apple	96.4	96.8	restricted
+Manihot esculenta v6.1 (https://phytozome-next.jgi.doe.gov/info/Mesculenta_v6_1)	305	JGI	JGI	cassava	97.7	95.3	unrestricted
+Manihot esculenta v7.1 (https://phytozome-next.jgi.doe.gov/info/Mesculenta_v7_1)	520	UC Berkeley	JGI	cassava	98.7	98.1	unrestricted
+Manihot esculenta v8.1 (https://phytozome-next.jgi.doe.gov/info/Mesculenta_v8_1)	671	UCB	JGI	cassava	98.3	98.7	unrestricted
+Marchantia polymorpha v3.1 (https://phytozome-next.jgi.doe.gov/info/Mpolymorpha_v3_1)	320	JGI	JGI	common liverwort	97.7	66.7	unrestricted
+Medicago truncatula Mt4.0v1 (https://phytozome-next.jgi.doe.gov/info/Mtruncatula_Mt4_0v1)	285	JCVI	JCVI	barrel medic	97.4	93.6	unrestricted
+Micromonas pusilla CCMP1545 v3.0 (https://phytozome-next.jgi.doe.gov/info/MpusillaCCMP1545_v3_0)	228	JGI.FG	JGI.FG		87.5	21.1	unrestricted
+Micromonas sp RCC299 v3.0 (https://phytozome-next.jgi.doe.gov/info/MspRCC299_v3_0)	229	JGI.FG	JGI.FG		89.8	22.7	unrestricted
+Mimulus guttatus v2.0 (https://phytozome-next.jgi.doe.gov/info/Mguttatus_v2_0)	256	JGI	JGI	monkey flower	98.0	94.5	unrestricted
+Mimulus guttatus NONTOL v3.1 (https://phytozome-next.jgi.doe.gov/info/MguttatusNONTOL_v3_1)	506	JGI	JGI	monkey flower	91.9	91.9	restricted
+Mimulus guttatus NONTOL v4.0 (https://phytozome-next.jgi.doe.gov/info/MguttatusNONTOL_v4_0)	553	JGI	JGI	monkey flower	95.7	91.8	restricted
+Mimulus guttatus TOL v3.1 (https://phytozome-next.jgi.doe.gov/info/MguttatusTOL_v3_1)	505	JGI	JGI	monkey flower	93.0	93.0	restricted
+Mimulus guttatus TOL v5.0 (https://phytozome-next.jgi.doe.gov/info/MguttatusTOL_v5_0)	551	JGI	JGI	monkey flower	96.0	93.1	restricted
+Miscanthus sinensis v7.1 (https://phytozome-next.jgi.doe.gov/info/Msinensis_v7_1)	497	JGI	JGI	Chinese silver grass	97.7	97.6	unrestricted
+Musa acuminata v1 (https://phytozome-next.jgi.doe.gov/info/Macuminata_v1)	304	Genoscope/Cirad	Genoscope/Cirad	banana	94.1	86.7	unrestricted
+Myagrum perfoliatum v1.1 (https://phytozome-next.jgi.doe.gov/info/Mperfoliatum_v1_1)	471	JGI	JGI	bird's eye cress	98.3	97.6	restricted
+Myagrum perfoliatum v2.1 (https://phytozome-next.jgi.doe.gov/info/Mperfoliatum_v2_1)	583	JGI	JGI	bird's eye cress	98.0	98.5	restricted
+Nymphaea colorata v1.2 (https://phytozome-next.jgi.doe.gov/info/Ncolorata_v1_2)	566	Zhejiang University	JGI	water lilly	98.0	92.5	unrestricted
+Olea europaea v1.0 (https://phytozome-next.jgi.doe.gov/info/Oeuropaea_v1_0)	451	OGC	OGC	olive	90.1	79.9	unrestricted
+Oropetium thomaeum v1.0 (https://phytozome-next.jgi.doe.gov/info/Othomaeum_v1_0)	386	DanforthCenter	DanforthCenter		84.2	70.2	unrestricted
+Oryza sativa v7.0 (https://phytozome-next.jgi.doe.gov/info/Osativa_v7_0)	323	MSU	MSU	rice	95.0	95.6	unrestricted
+Oryza sativa Kitaake v3.1 (https://phytozome-next.jgi.doe.gov/info/OsativaKitaake_v3_1)	499	JGI	JGI	rice	98.3	99.1	unrestricted
+Ostreococcus lucimarinus v2.0 (https://phytozome-next.jgi.doe.gov/info/Olucimarinus_v2_0)	231	JGI.FG	JGI.FG		84.5	20.2	unrestricted
+Panicum hallii v2.0 (https://phytozome-next.jgi.doe.gov/info/Phallii_v2_0)	308	JGI	JGI	Hall's panicgrass	97.4	96.6	unrestricted
+Panicum hallii v3.1 (https://phytozome-next.jgi.doe.gov/info/Phallii_v3_1)	495	JGI	JGI	Hall's panicgrass	97.4	98.1	unrestricted
+Panicum hallii v3.2 (https://phytozome-next.jgi.doe.gov/info/Phallii_v3_2)	590	JGI	JGI	Hall's panicgrass	97.7	99.3	unrestricted
+Panicum hallii HAL v2.1 (https://phytozome-next.jgi.doe.gov/info/PhalliiHAL_v2_1)	496	JGI	JGI	Hall's panicgrass	98.0	98.9	unrestricted
+Panicum hallii HAL v2.2 (https://phytozome-next.jgi.doe.gov/info/PhalliiHAL_v2_2)	591	JGI	JGI	Hall's panicgrass	98.3	99.2	unrestricted
+Panicum virgatum v4.1 (https://phytozome-next.jgi.doe.gov/info/Pvirgatum_v4_1)	450	JGI	JGI	switchgrass	98.0	98.3	unrestricted
+Panicum virgatum v5.1 (https://phytozome-next.jgi.doe.gov/info/Pvirgatum_v5_1)	516	JGI	JGI	switchgrass	98.3	99.4	unrestricted
+Panicum virgatum var. AP13 HAP1 v6.1 (https://phytozome-next.jgi.doe.gov/info/Pvirgatumvar_AP13HAP1_v6_1)	772	JGI	JGI	switchgrass	98.3	99.7	restricted
+Panicum virgatum var. AP13 HAP2 v6.1 (https://phytozome-next.jgi.doe.gov/info/Pvirgatumvar_AP13HAP2_v6_1)	773	JGI	JGI	switchgrass	98.3	99.7	restricted
+Paspalum vaginatum v3.1 (https://phytozome-next.jgi.doe.gov/info/Pvaginatum_v3_1)	672	HA	JGI	biscuit grass	97.7	98.9	unrestricted
+Pharus latifolius v1.1 (https://phytozome-next.jgi.doe.gov/info/Platifolius_v1_1)	680	JGI	JGI		98.0	98.4	restricted
+Phaseolus acutifolius v1.0 (https://phytozome-next.jgi.doe.gov/info/Pacutifolius_v1_0)	580	HA	MSU	tepary bean	97.4	94.7	unrestricted
+Phaseolus acutifolius WLD v2.0 (https://phytozome-next.jgi.doe.gov/info/PacutifoliusWLD_v2_0)	581	U Saskatchewan	MSU	tepary bean	96.4	95.8	unrestricted
+Phaseolus lunatus V1 (https://phytozome-next.jgi.doe.gov/info/Plunatus_V1)	563	Uniandes	Uniandes	lima bean	96.4	93.7	restricted
+Phaseolus vulgaris v2.1 (https://phytozome-next.jgi.doe.gov/info/Pvulgaris_v2_1)	442	JGI	JGI	common bean	97.7	96.4	restricted
+Phaseolus vulgaris 5-593 v1.1 (https://phytozome-next.jgi.doe.gov/info/Pvulgaris5_593_v1_1)	696	HA	HA	common bean	98.3	96.0	restricted
+Phaseolus vulgaris Labor Ovalle v1.1 (https://phytozome-next.jgi.doe.gov/info/PvulgarisLaborOvalle_v1_1)	670	HA	HA	common bean	98.3	95.1	restricted
+Phaseolus vulgaris UI111 v1.1 (https://phytozome-next.jgi.doe.gov/info/PvulgarisUI111_v1_1)	534	JGI	JGI	common bean	98.3	96.9	restricted
+Physcomitrium patens v3.3 (https://phytozome-next.jgi.doe.gov/info/Ppatens_v3_3)	318	COSMOSS	COSMOSS	moss Physcomitrella patens	98.7	67.9	unrestricted
+Poncirus trifoliata v1.3.1 (https://phytozome-next.jgi.doe.gov/info/Ptrifoliata_v1_3_1)	565	JGI	JGI	hardy orange	97.4	97.2	unrestricted
+Populus deltoides WV94 v2.1 (https://phytozome-next.jgi.doe.gov/info/PdeltoidesWV94_v2_1)	445	JGI	JGI	eastern cottonwood	97.7	94.4	restricted
+Populus nigra x maximowiczii NM6 v1.1 (https://phytozome-next.jgi.doe.gov/info/PnigraxmaximowicziiNM6_v1_1)	688	JGI	JGI	hybrid poplar	99.3	98.6	restricted
+Populus tremula x Populus alba HAP1 v5.1 (https://phytozome-next.jgi.doe.gov/info/PtremulaxPopulusalbaHAP1_v5_1)	717	JGI	JGI		98.7	98.7	restricted
+Populus tremula x Populus alba HAP2 v5.1 (https://phytozome-next.jgi.doe.gov/info/PtremulaxPopulusalbaHAP2_v5_1)	716	JGI	JGI		98.3	98.7	restricted
+Populus trichocarpa v3.0 (https://phytozome-next.jgi.doe.gov/info/Ptrichocarpa_v3_0)	210	JGI	JGI	western poplar	98.7	97.6	unrestricted
+Populus trichocarpa v3.1 (https://phytozome-next.jgi.doe.gov/info/Ptrichocarpa_v3_1)	444	JGI	JGI	western poplar	98.7	97.4	unrestricted
+Populus trichocarpa v4.1 (https://phytozome-next.jgi.doe.gov/info/Ptrichocarpa_v4_1)	533	JGI	JGI	western poplar	98.7	98.9	unrestricted
+Populus trichocarpa Stettler14 v1.1 (https://phytozome-next.jgi.doe.gov/info/PtrichocarpaStettler14_v1_1)	532	JGI	JGI	western poplar	98.3	98.3	restricted
+Porphyra umbilicalis v1.5 (https://phytozome-next.jgi.doe.gov/info/Pumbilicalis_v1_5)	456	JGI	JGI	seaweed	62.0	7.7	unrestricted
+Portulaca amilis v1.0 (https://phytozome-next.jgi.doe.gov/info/Pamilis_v1_0)	692	Yale	Yale	Paraguayan purslane	93.7	89.0	unrestricted
+Prunus persica v2.1 (https://phytozome-next.jgi.doe.gov/info/Ppersica_v2_1)	298	JGI	JGI	peach	99.0	98.8	unrestricted
+Quercus rubra v2.1 (https://phytozome-next.jgi.doe.gov/info/Qrubra_v2_1)	687	HA	HA	northern red oak	97.7	97.4	restricted
+Ricinus communis v0.1 (https://phytozome-next.jgi.doe.gov/info/Rcommunis_v0_1)	119	TIGR	TIGR	castor bean plant	94.1	90.0	unrestricted
+Rorippa islandica v1.1 (https://phytozome-next.jgi.doe.gov/info/Rislandica_v1_1)	473	JGI	JGI	marsh cress	98.7	98.1	restricted
+Saccharum officinarum x spontaneum R570 v2.1 (https://phytozome-next.jgi.doe.gov/info/SofficinarumxspontaneumR570_v2_1)	771	JGI	JGI	sugarcane	98.7	99.8	restricted
+Salix purpurea v1.0 (https://phytozome-next.jgi.doe.gov/info/Spurpurea_v1_0)	289	JGI/JCVI	JGI/JCVI	shrub willow	98.7	97.0	unrestricted
+Salix purpurea v5.1 (https://phytozome-next.jgi.doe.gov/info/Spurpurea_v5_1)	519	JGI	JGI	shrub willow	98.3	97.0	unrestricted
+Salix purpurea Fish Creek v3.1 (https://phytozome-next.jgi.doe.gov/info/SpurpureaFishCreek_v3_1)	518	JGI	JGI	shrub willow	98.3	97.2	unrestricted
+Schrenkiella parvula v2.2 (https://phytozome-next.jgi.doe.gov/info/Sparvula_v2_2)	574	LSU	LSU		98.3	96.8	unrestricted
+Selaginella moellendorffii v1.0 (https://phytozome-next.jgi.doe.gov/info/Smoellendorffii_v1_0)	91	JGI	JGI	spikemoss	95.7	61.8	unrestricted
+Setaria italica v2.2 (https://phytozome-next.jgi.doe.gov/info/Sitalica_v2_2)	312	JGI	JGI	foxtail millet	98.7	98.4	unrestricted
+Setaria viridis v1.1 (https://phytozome-next.jgi.doe.gov/info/Sviridis_v1_1)	311	JGI	JGI	green foxtail millet	97.7	97.5	unrestricted
+Setaria viridis v2.1 (https://phytozome-next.jgi.doe.gov/info/Sviridis_v2_1)	500	JGI	JGI	green foxtail millet	98.0	99.0	unrestricted
+Setaria viridis v4.1 (https://phytozome-next.jgi.doe.gov/info/Sviridis_v4_1)	726	JGI	JGI	green foxtail millet	98.3	99.2	restricted
+Sinapis alba v1.1 (https://phytozome-next.jgi.doe.gov/info/Salba_v1_1)	480	JGI	JGI	white mustard	98.0	98.2	restricted
+Sinapis alba v3.1 (https://phytozome-next.jgi.doe.gov/info/Salba_v3_1)	584	JGI	JGI	white mustard	98.3	98.1	restricted
+Solanum lycopersicum ITAG2.4 (https://phytozome-next.jgi.doe.gov/info/Slycopersicum_ITAG2_4)	390	iTAG	iTAG	tomato	96.3	95.5	unrestricted
+Solanum lycopersicum ITAG3.2 (https://phytozome-next.jgi.doe.gov/info/Slycopersicum_ITAG3_2)	514	iTAG	ITAG	tomato	95.7	94.5	unrestricted
+Solanum lycopersicum ITAG4.0 (https://phytozome-next.jgi.doe.gov/info/Slycopersicum_ITAG4_0)	691	SGN	ITAG	tomato	95.4	93.6	unrestricted
+Solanum lycopersicum ITAG5.0 (https://phytozome-next.jgi.doe.gov/info/Slycopersicum_ITAG5_0)	796	AGI_CAAS_Shenzhen	AGI_CAAS_Shenzhen	tomato	94.7	93.5	restricted
+Solanum tuberosum v4.03 (https://phytozome-next.jgi.doe.gov/info/Stuberosum_v4_03)	448	MSU	MSU	potato	87.1	85.5	unrestricted
+Solanum tuberosum v6.1 (https://phytozome-next.jgi.doe.gov/info/Stuberosum_v6_1)	686	MSU	MSU	potato	98.0	95.1	unrestricted
+Sorghum bicolor v3.1.1 (https://phytozome-next.jgi.doe.gov/info/Sbicolor_v3_1_1)	454	JGI	JGI	sorghum	98.3	98.3	unrestricted
+Sorghum bicolor v5.1 (https://phytozome-next.jgi.doe.gov/info/Sbicolor_v5_1)	730	JGI	JGI	sorghum	98.7	99.7	restricted
+Sorghum bicolor BTx642 v1.1 (https://phytozome-next.jgi.doe.gov/info/SbicolorBTx642_v1_1)	564	JGI	JGI	sorghum	98.3	99.4	restricted
+Sorghum bicolor RTx430 v2.1 (https://phytozome-next.jgi.doe.gov/info/SbicolorRTx430_v2_1)	552	JGI	JGI	sorghum	98.0	99.2	restricted
+Sorghum bicolor Rio v2.1 (https://phytozome-next.jgi.doe.gov/info/SbicolorRio_v2_1)	468	JGI	JGI	sorghum	97.0	97.0	unrestricted
+Sorghum bicolor SC187 v1.1 (https://phytozome-next.jgi.doe.gov/info/SbicolorSC187_v1_1)	694	JGI	JGI	sorghum	98.0	99.4	restricted
+Sorghum bicolor Wray v1.1 (https://phytozome-next.jgi.doe.gov/info/SbicolorWray_v1_1)	781	JGI	JGI		98.0	99.4	restricted
+Sphagnum fallax v0.5 (https://phytozome-next.jgi.doe.gov/info/Sfallax_v0_5)	310	JGI	JGI	flat-topped bogmoss	98.0	71.1	unrestricted
+Sphagnum fallax v1.1 (https://phytozome-next.jgi.doe.gov/info/Sfallax_v1_1)	522	JGI	JGI	flat-topped bogmoss	98.3	71.3	unrestricted
+Sphagnum magellanicum v1.1 (https://phytozome-next.jgi.doe.gov/info/Smagellanicum_v1_1)	521	JGI	JGI	magellanic bogmoss Sphagnum divinum	98.3	71.6	unrestricted
+Spinacia oleracea Spov3 (https://phytozome-next.jgi.doe.gov/info/Soleracea_Spov3)	575	UCD	UCD	spinach	92.7	83.9	unrestricted
+Spirodela polyrhiza v2 (https://phytozome-next.jgi.doe.gov/info/Spolyrhiza_v2)	290	MIPS	MIPS	greater duckweed	92.7	79.6	unrestricted
+Stanleya pinnata v1.1 (https://phytozome-next.jgi.doe.gov/info/Spinnata_v1_1)	486	JGI	JGI	Princes Plume	82.8	71.2	restricted
+Theobroma cacao v1.1 (https://phytozome-next.jgi.doe.gov/info/Tcacao_v1_1)	233	CGD	CGD	cocoa bean	98.3	97.7	unrestricted
+Theobroma cacao v2.1 (https://phytozome-next.jgi.doe.gov/info/Tcacao_v2_1)	523	JGI	JGI	cocoa bean	98.3	98.1	restricted
+Thinopyrum intermedium v2.1 (https://phytozome-next.jgi.doe.gov/info/Tintermedium_v2_1)	503	JGI	JGI	intermediate wheatgrass	97.7	97.4	restricted
+Thinopyrum intermedium v3.1 (https://phytozome-next.jgi.doe.gov/info/Tintermedium_v3_1)	770	JGI	JGI	intermediate wheatgrass	98.3	99.7	unrestricted
+Thlaspi arvense v1.1 (https://phytozome-next.jgi.doe.gov/info/Tarvense_v1_1)	479	JGI	JGI	field pennycress	98.3	97.5	restricted
+Thuja plicata v3.1 (https://phytozome-next.jgi.doe.gov/info/Tplicata_v3_1)	572	UBC	JGI	western red-cedar	96.7	84.5	unrestricted
+Trifolium pratense v2 (https://phytozome-next.jgi.doe.gov/info/Tpratense_v2)	385	TGAC	TGAC	red clover	93.4	87.6	unrestricted
+Triticum aestivum v2.2 (https://phytozome-next.jgi.doe.gov/info/Taestivum_v2_2)	296	MIPS	MIPS	wheat	92.7	89.4	unrestricted
+Triticum aestivum cv. Chinese Spring v2.1 (https://phytozome-next.jgi.doe.gov/info/Taestivumcv_ChineseSpring_v2_1)	725	IWGSC	IWGSC	bread wheat	98.0	99.3	unrestriced
+Urochloa fusca v1.1 (https://phytozome-next.jgi.doe.gov/info/Ufusca_v1_1)	669	JGI	JGI		95.4	97.2	restricted
+Vaccinium darrowii v1.2 (https://phytozome-next.jgi.doe.gov/info/Vdarrowii_v1_2)	700	USDA/UTK	USDA/UTK	evergreen blueberry	93.7	90.1	unrestricted
+Vigna unguiculata v1.1 (https://phytozome-next.jgi.doe.gov/info/Vunguiculata_v1_1)	469	UCR	JGI	cowpea	98.3	95.9	unrestricted
+Vigna unguiculata v1.2 (https://phytozome-next.jgi.doe.gov/info/Vunguiculata_v1_2)	540	UCR	JGI	cowpea	98.7	96.0	restricted
+Vigna unguiculata CB5-2 v1.1 (https://phytozome-next.jgi.doe.gov/info/VunguiculataCB5_2_v1_1)	545	UCR	JGI	cowpea	97.7	95.1	restricted
+Vigna unguiculata Sanzi v1.1 (https://phytozome-next.jgi.doe.gov/info/VunguiculataSanzi_v1_1)	544	UCR	JGI	cowpea	96.7	95.6	restricted
+Vigna unguiculata Suvita2 v1.1 (https://phytozome-next.jgi.doe.gov/info/VunguiculataSuvita2_v1_1)	541	UCR	JGI	cowpea	98.0	95.3	restricted
+Vigna unguiculata TZ30 v1.2 (https://phytozome-next.jgi.doe.gov/info/VunguiculataTZ30_v1_2)	558	UCR	JGI	cowpea	97.7	95.3	restricted
+Vigna unguiculata UCR779 v1.1 (https://phytozome-next.jgi.doe.gov/info/VunguiculataUCR779_v1_1)	543	UCR	JGI	cowpea	97.0	95.6	restricted
+Vigna unguiculata ZN016 v1.2 (https://phytozome-next.jgi.doe.gov/info/VunguiculataZN016_v1_2)	559	UCR	JGI	cowpea	96.7	95.6	restricted
+Vitis vinifera v2.1 (https://phytozome-next.jgi.doe.gov/info/Vvinifera_v2_1)	457	CRIBI	CRIBI	grape vine	97.7	95.8	unrestricted
+Volvox carteri v2.1 (https://phytozome-next.jgi.doe.gov/info/Vcarteri_v2_1)	317	JGI	JGI	volvox	94.7	26.0	unrestricted
+Zea mays RefGen_V4 (https://phytozome-next.jgi.doe.gov/info/Zmays_RefGen_V4)	493	CSHL	CSHL	maize	97.7	95.2	unrestricted
+Zea mays Zm-B73-REFERENCE-NAM-5.0.55 (https://phytozome-next.jgi.doe.gov/info/Zmays_Zm_B73_REFERENCE_NAM_5_0_55)	833	MaizeGDB	nam-genomes	maize	97.0	96.4	unrestricted
+Zea mays B84 v1.2 (https://phytozome-next.jgi.doe.gov/info/ZmaysB84_v1_2)	681	JGI	JGI	maize	98.7	99.2	unrestricted
+Zea mays LH145 v1.2 (https://phytozome-next.jgi.doe.gov/info/ZmaysLH145_v1_2)	682	JGI	JGI	maize	99.0	99.1	unrestricted
+Zea mays NKH8431 v1.2 (https://phytozome-next.jgi.doe.gov/info/ZmaysNKH8431_v1_2)	683	JGI	JGI	maize	98.7	99.2	unrestricted
+Zea mays PH207 v1.1 (https://phytozome-next.jgi.doe.gov/info/ZmaysPH207_v1_1)	443	UMN	UMN	maize	95.0	87.9	unrestricted
+Zea mays PHB47 v1.1 (https://phytozome-next.jgi.doe.gov/info/ZmaysPHB47_v1_1)	513	JGI	JGI	maize	97.7	97.4	unrestricted
+Zea mays PHB47 v1.2 (https://phytozome-next.jgi.doe.gov/info/ZmaysPHB47_v1_2)	684	JGI	JGI	maize	98.7	99.0	unrestricted
+Zea mays PHJ40 v1.1 (https://phytozome-next.jgi.doe.gov/info/ZmaysPHJ40_v1_1)	512	JGI	JGI	maize	98.7	98.0	unrestricted
+Zea mays PHJ40 v1.2 (https://phytozome-next.jgi.doe.gov/info/ZmaysPHJ40_v1_2)	685	JGI	JGI	maize	98.7	99.2	unrestricted
+Zostera marina v2.2 (https://phytozome-next.jgi.doe.gov/info/Zmarina_v2_2)	324	ORCAE	ORCAE	common eelgrass	97.0	85.0	unrestricted
+Zostera marina v3.1 (https://phytozome-next.jgi.doe.gov/info/Zmarina_v3_1)	668	JGI	Ghent	common eelgrass	96.0	85.3	unrestricted
diff --git a/data/default/contribute-data/contributor_datasets.json b/data/contributor_datasets.json
similarity index 100%
rename from data/default/contribute-data/contributor_datasets.json
rename to data/contributor_datasets.json
diff --git a/data/default/search-data-repositories/datasets.json b/data/datasets.json
similarity index 100%
rename from data/default/search-data-repositories/datasets.json
rename to data/datasets.json
diff --git a/data/default/run-computation/inputs.json b/data/default/run-computation/inputs.json
deleted file mode 100644
index 1aa06d36..00000000
--- a/data/default/run-computation/inputs.json
+++ /dev/null
@@ -1,42 +0,0 @@
-[
-  {
-    "id": 0,
-    "name": "value",
-    "unitType": "value",
-    "lowerBound": 0,
-    "upperBound": 1,
-    "constraints": "value"
-  },
-  {
-    "id": 1,
-    "name": "value",
-    "unitType": "value",
-    "lowerBound": 0,
-    "upperBound": 1,
-    "constraints": "value"
-  },
-  {
-    "id": 2,
-    "name": "value",
-    "unitType": "value",
-    "lowerBound": 0,
-    "upperBound": 1,
-    "constraints": "value"
-  },
-  {
-    "id": 3,
-    "name": "value",
-    "unitType": "value",
-    "lowerBound": 0,
-    "upperBound": 1,
-    "constraints": "value"
-  },
-  {
-    "id": 4,
-    "name": "value",
-    "unitType": "value",
-    "lowerBound": 0,
-    "upperBound": 1,
-    "constraints": "value"
-  }
-]
\ No newline at end of file
diff --git a/data/default/run-computation/list.json b/data/default/run-computation/list.json
deleted file mode 100644
index 246fa9cc..00000000
--- a/data/default/run-computation/list.json
+++ /dev/null
@@ -1,37 +0,0 @@
-[
-  {
-    "id": 0,
-    "name": "Scenario 1",
-    "analysisType": "Sensitivity Analysis",
-    "createdDate": "05/24/2023",
-    "status": "Running"
-  },
-  {
-    "id": 1,
-    "name": "Scenario 2",
-    "analysisType": "Sensitivity Analysis",
-    "createdDate": "05/24/2023",
-    "status": "Draft"
-  },
-  {
-    "id": 2,
-    "name": "Scenario 3",
-    "analysisType": "Optimization",
-    "createdDate": "05/24/2023",
-    "status": "Completed"
-  },
-  {
-    "id": 3,
-    "name": "Scenario 4",
-    "analysisType": "Optimization",
-    "createdDate": "05/23/2023",
-    "status": "Completed"
-  },
-  {
-    "id": 4,
-    "name": "Scenario 5",
-    "analysisType": "Optimization",
-    "createdDate": "05/23/2023",
-    "status": "Completed"
-  }
-]
\ No newline at end of file
diff --git a/data/default/run-computation/results_bar_chart.json b/data/default/run-computation/results_bar_chart.json
deleted file mode 100644
index 743c8e93..00000000
--- a/data/default/run-computation/results_bar_chart.json
+++ /dev/null
@@ -1,14 +0,0 @@
-[
-  {
-    "x": ["Category 1", "Category 2", "Category 3"],
-    "y": [20, 14, 23],
-    "name": "Group 1",
-    "type": "bar"
-  },
-  {
-    "x": ["Category 1", "Category 2", "Category 3"],
-    "y": [12, 18, 29],
-    "name": "Group 2",
-    "type": "bar"
-  }
-]
\ No newline at end of file
diff --git a/data/default/run-computation/results_line_chart.json b/data/default/run-computation/results_line_chart.json
deleted file mode 100644
index 2e72bae1..00000000
--- a/data/default/run-computation/results_line_chart.json
+++ /dev/null
@@ -1,12 +0,0 @@
-[
-  {
-    "x": [1, 2, 3, 4],
-    "y": [10, 15, 13, 17],
-    "type": "scatter"
-  },
-  {
-    "x": [1, 2, 3, 4],
-    "y": [16, 5, 11, 9],
-    "type": "scatter"
-  }
-]
\ No newline at end of file
diff --git a/data/default/run-computation/results_table.json b/data/default/run-computation/results_table.json
deleted file mode 100644
index 1aa06d36..00000000
--- a/data/default/run-computation/results_table.json
+++ /dev/null
@@ -1,42 +0,0 @@
-[
-  {
-    "id": 0,
-    "name": "value",
-    "unitType": "value",
-    "lowerBound": 0,
-    "upperBound": 1,
-    "constraints": "value"
-  },
-  {
-    "id": 1,
-    "name": "value",
-    "unitType": "value",
-    "lowerBound": 0,
-    "upperBound": 1,
-    "constraints": "value"
-  },
-  {
-    "id": 2,
-    "name": "value",
-    "unitType": "value",
-    "lowerBound": 0,
-    "upperBound": 1,
-    "constraints": "value"
-  },
-  {
-    "id": 3,
-    "name": "value",
-    "unitType": "value",
-    "lowerBound": 0,
-    "upperBound": 1,
-    "constraints": "value"
-  },
-  {
-    "id": 4,
-    "name": "value",
-    "unitType": "value",
-    "lowerBound": 0,
-    "upperBound": 1,
-    "constraints": "value"
-  }
-]
\ No newline at end of file
diff --git a/data/default/monitor-activities/experiment_detail.json b/data/experiment_detail.json
similarity index 100%
rename from data/default/monitor-activities/experiment_detail.json
rename to data/experiment_detail.json
diff --git a/data/default/monitor-activities/experiments.json b/data/experiments.json
similarity index 100%
rename from data/default/monitor-activities/experiments.json
rename to data/experiments.json
diff --git a/data/default/compare-data/scenarios.json b/data/scenarios.json
similarity index 100%
rename from data/default/compare-data/scenarios.json
rename to data/scenarios.json