diff --git a/strudel_ex/gbif-app/.eslintrc.cjs b/strudel_ex/gbif-app/.eslintrc.cjs new file mode 100644 index 00000000..7dbd9d18 --- /dev/null +++ b/strudel_ex/gbif-app/.eslintrc.cjs @@ -0,0 +1,18 @@ +module.exports = { + root: true, + env: { browser: true, es2020: true }, + extends: [ + 'eslint:recommended', + 'plugin:@typescript-eslint/recommended', + 'plugin:react-hooks/recommended', + ], + ignorePatterns: ['dist', '.eslintrc.cjs'], + parser: '@typescript-eslint/parser', + plugins: ['react-refresh'], + rules: { + 'react-refresh/only-export-components': [ + 'warn', + { allowConstantExport: true }, + ], + }, +} diff --git a/strudel_ex/gbif-app/.gitignore b/strudel_ex/gbif-app/.gitignore new file mode 100644 index 00000000..590784c8 --- /dev/null +++ b/strudel_ex/gbif-app/.gitignore @@ -0,0 +1,4 @@ +# See https://help.github.com/articles/ignoring-files/ for more about ignoring files. + +# dependencies +node_modules/ \ No newline at end of file diff --git a/strudel_ex/gbif-app/README.md b/strudel_ex/gbif-app/README.md new file mode 100644 index 00000000..95a2aa03 --- /dev/null +++ b/strudel_ex/gbif-app/README.md @@ -0,0 +1,37 @@ +:warning: ***This library is in early-stage development. Check back soon for more updates!*** + +# STRUDEL Kit + +STRUDEL Kit is a React-based JavaScript library for building scientific UIs based on the STRUDEL Design System and Task Flows. Visit [strudel.science](https://strudel.science) for more information about the STRUDEL project. + +This library provides a suite of templates to implement UIs for various different task flows common to the scientific domain. The app is intended to be used as a starting point for building out a web app that includes one or more of the task flows provided. + +## Getting Started + +Clone the strudel-kit repository from github: + +``` +git clone git@github.com:strudel-science/strudel-kit.git +``` + +Install the dependencies: + +``` +npm install +``` + +Start up the app: + +``` +npm start +``` + +Open [http://localhost:3000](http://localhost:3000) to view the app in the browser. + +Begin modifying the templates in `src/app`. + +## Learn More + +STRUDEL Kit is built on top of the Material UI (MUI) component library. [Read more about how to use MUI](https://mui.com/material-ui/getting-started/). + +[strudel.science](https://strudel.science) diff --git a/strudel_ex/gbif-app/index.html b/strudel_ex/gbif-app/index.html new file mode 100644 index 00000000..63d3a80a --- /dev/null +++ b/strudel_ex/gbif-app/index.html @@ -0,0 +1,13 @@ + + + + + + + STRUDEL + React + MUI + + +
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1758)",55.435425,38.470536,2024,"HUMAN_OBSERVATION" \ No newline at end of file diff --git a/strudel_ex/gbif-app/public/data/default/compare-data/scenarios.json b/strudel_ex/gbif-app/public/data/default/compare-data/scenarios.json new file mode 100644 index 00000000..29f32058 --- /dev/null +++ b/strudel_ex/gbif-app/public/data/default/compare-data/scenarios.json @@ -0,0 +1,178 @@ +[ + { + "id": 0, + "name": "Scenario Dandelion", + "description": "Ex aliquip consectetur laboris occaecat deserunt nulla aliqua est ut.", + "analysis_type": "Sensitivity Analysis", + "volumetric_flow_rate": 25000000, + "tss_concentration": 500, + "cod_concentration": 700, + "tkn_concentration": 65, + "acetic_acid_concentration": 0, + "metric6": 15, + "metric7": 245, + "metric8": 9852, + "metric9": 4, + "metric10": 0 + }, + { + "id": 1, + "name": "Scenario Tulip", + "description": "Occaecat consequat exercitation minim do ullamco laborum aliquip.", + "analysis_type": "Sensitivity Analysis", + 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a/strudel_ex/gbif-app/public/data/default/contribute-data/contributor_datasets.json b/strudel_ex/gbif-app/public/data/default/contribute-data/contributor_datasets.json new file mode 100644 index 00000000..e116e313 --- /dev/null +++ b/strudel_ex/gbif-app/public/data/default/contribute-data/contributor_datasets.json @@ -0,0 +1,167 @@ +[ + { + "id": 0, + "title": "Data from Decadal Change in Groundwater Quality Web Site (1988 - 2012)", + "publication_date": "2018-02-02", + "start_date": "1988-01-01", + "end_date": "2010-12-31", + "citation": "Lindsey, B.D., Johnson, T.D., and Belitz, Kenneth, 2018, Data from Decadal Change in Groundwater Quality Web Site, 1988-2012: U.S. Geological Survey data release, https://doi.org/10.5066/F7PC30WD.", + "doi": "10.5066/F7PC30WD", + "summary": "Groundwater quality data were collected in 5,000 wells between 1988-2001 by the National Water-Quality Assessment Project. About 1,500 of these wells were sampled again between 2002-2012 to evaluate decadal changes in groundwater quality. Monitoring wells, domestic supply wells, and some public supply wells were included in this study.", + "tags": [ "NAWQA", "National Water Quality Program", "USGS Science Data Catalog (SDC)", "Cycle 3", "groundwater quality", "trends", "water quality"], + "category": "Groundwater", + "purpose": "Data were collected as a part of the NAWQA Land use studies or Major aquifer studies. Initially data were collected to characterize the quality of shallow and medium depths of groundwater in the nation. Subsequent samples were collected to evaluate changes in concentrations over a decadal time span. Mapping criteria and benchmarks: The NAWQA Project has developed an interactive mapping tool that displays decadal changes in concentrations.", + "point_of_contact": "Bruce D. Lindsey", + "originator": "Bruce D. Lindsey, Tyler D Johnson", + "metadata_contact": "Jennifer B Sharpe", + "publisher": "U.S Geological Survey", + "distributor": "U.S Geological Survey - ScienceBase", + "usgs_mission_area": "Water Resources", + "attached_files": [ + { + "file_id": 0, + "file_name": "Laborum-velit-in-minim.zip", + "file_size": "42.7 MB", + "description": "Ad qui Lorem ea voluptate" + }, + { + "file_id": 1, + "file_name": "Duis-qui-consectetur.xml", + "file_size": "8 KB", + "description": "Adipisicing deserunt anim reprehenderit" + } + ] + }, + { + "id": 1, + "title": "Fire perimeter data for the 1987 Black Dragon Fire in China (1987)", + "publication_date": "2023-01-01", + "start_date": "2010-01-01", + "end_date": "2021-01-01", + "citation": "Labore proident do aute et esse adipisicing veniam eiusmod culpa pariatur sunt officia.", + "doi": "0000000000", + "summary": "Geospatial data were developed to characterize pre-fire biomass, burn severity, and biomass consumed for the Black Dragon Fire that burned in northern China in 1987. Ipsum id laborum et dolor laboris ut sint officia voluptate. Ipsum consectetur fugiat laboris sit Lorem duis minim fugiat.", + "tags": ["Boreal forest", "Carbon and greenhouse gas emissions", "China", "Ecology", "Forestry"], + "category": "Fires", + "purpose": "Nostrud ullamco ea id consequat ex. Tempor deserunt laborum amet ex quis culpa laborum Lorem Lorem sunt do sit excepteur. Sunt ea velit non magna ut Lorem magna eu aute aliquip.", + "point_of_contact": "Ernest O. Lawrence", + "originator": "Darleane C. Hoffman", + "metadata_contact": "Glenn T. Seaborg", + "publisher": "U.S Geological Survey", + "distributor": "U.S Geological Survey - ScienceBase", + "usgs_mission_area": "Water Resources", + "attached_files": [ + { + "file_id": 0, + "file_name": "Laborum-velit-in-minim.zip", + "file_size": "42.7 MB", + "description": "Ad qui Lorem ea voluptate" + }, + { + "file_id": 1, + "file_name": "Duis-qui-consectetur.xml", + "file_size": "8 KB", + "description": "Adipisicing deserunt anim reprehenderit" + } + ] + }, + { + "id": 2, + "title": "Flood Inundation Extent and Depth in Selected Areas of Southern U.S. (March 2016)", + "publication_date": "2023-01-01", + "start_date": "2010-01-01", + "end_date": "2021-01-01", + "citation": "Labore proident do aute et esse adipisicing veniam eiusmod culpa pariatur sunt officia.", + "doi": "0000000000", + "summary": "Heavy rainfall occurred across Louisiana, Texas, Arkansas, and Mississippi in March 2016 as a result of a slow-moving southward dip in the jetstream , funneling tropical moisture into Ipsum id laborum et dolor laboris ut sint officia voluptate. Ipsum consectetur fugiat laboris sit Lorem duis minim fugiat.", + "tags": ["Louisiana", "Mississippi", "Texas", "Floods", "USGS Data Catalog (SDC)"], + "category": "Floods", + "purpose": "Nostrud ullamco ea id consequat ex. Tempor deserunt laborum amet ex quis culpa laborum Lorem Lorem sunt do sit excepteur. Sunt ea velit non magna ut Lorem magna eu aute aliquip.", + "point_of_contact": "Ernest O. Lawrence", + "originator": "Darleane C. Hoffman", + "metadata_contact": "Glenn T. Seaborg", + "publisher": "U.S Geological Survey", + "distributor": "U.S Geological Survey - ScienceBase", + "usgs_mission_area": "Water Resources", + "attached_files": [ + { + "file_id": 0, + "file_name": "Laborum-velit-in-minim.zip", + "file_size": "42.7 MB", + "description": "Ad qui Lorem ea voluptate" + }, + { + "file_id": 1, + "file_name": "Duis-qui-consectetur.xml", + "file_size": "8 KB", + "description": "Adipisicing deserunt anim reprehenderit" + } + ] + }, + { + "id": 3, + "title": "Bathymetric survey of the Brandon Road Dam Spillway, Joliet, Illinois (May 2015)", + "publication_date": "2023-01-01", + "start_date": "2010-01-01", + "end_date": "2021-01-01", + "citation": "Labore proident do aute et esse adipisicing veniam eiusmod culpa pariatur sunt officia.", + "doi": "0000000000", + "summary": "Bathymetric survey data of the Brandon Road Dam spillway was collected on May 27 and May 28, 2015 by the US Geological Survey (USGS) using Trimble Real-Time Kinematic Global Ipsum id laborum et dolor laboris ut sint officia voluptate. Ipsum consectetur fugiat laboris sit Lorem duis minim fugiat.", + "tags": ["Dam", "GPS measurement", "Brandon Road Lock and Dam", "Floods", "USGS Data Catalog (SDC)"], + "category": "Groundwater", + "purpose": "Nostrud ullamco ea id consequat ex. Tempor deserunt laborum amet ex quis culpa laborum Lorem Lorem sunt do sit excepteur. Sunt ea velit non magna ut Lorem magna eu aute aliquip.", + "point_of_contact": "Ernest O. Lawrence", + "originator": "Darleane C. Hoffman", + "metadata_contact": "Glenn T. Seaborg", + "publisher": "U.S Geological Survey", + "distributor": "U.S Geological Survey - ScienceBase", + "usgs_mission_area": "Water Resources", + "attached_files": [ + { + "file_id": 0, + "file_name": "Laborum-velit-in-minim.zip", + "file_size": "42.7 MB", + "description": "Ad qui Lorem ea voluptate" + }, + { + "file_id": 1, + "file_name": "Duis-qui-consectetur.xml", + "file_size": "8 KB", + "description": "Adipisicing deserunt anim reprehenderit" + } + ] + }, + { + "id": 4, + "title": "Data from mercury intrusion porosimetry conducted on samples of a mudstone underlying the Naval Air Warfare Center, West Trenton, New Jersey", + "publication_date": "2023-01-01", + "start_date": "2010-01-01", + "end_date": "2021-01-01", + "citation": "Labore proident do aute et esse adipisicing veniam eiusmod culpa pariatur sunt officia.", + "doi": "0000000000", + "summary": "This data set presents the results of conducting Mercury Intrusion Porosimetry on core samples of the mudstone underlying the Naval Air Warfare Center, West Trenton, New Jersey Ipsum id laborum et dolor laboris ut sint officia voluptate. Ipsum consectetur fugiat laboris sit Lorem duis minim fugiat.", + "tags": ["Sedimentary rock", "porosity", "West Trenton", "USGS Data Catalog (SDC)"], + "category": "Groundwater", + "purpose": "Nostrud ullamco ea id consequat ex. Tempor deserunt laborum amet ex quis culpa laborum Lorem Lorem sunt do sit excepteur. Sunt ea velit non magna ut Lorem magna eu aute aliquip.", + "point_of_contact": "Ernest O. Lawrence", + "originator": "Darleane C. Hoffman", + "metadata_contact": "Glenn T. Seaborg", + "publisher": "U.S Geological Survey", + "distributor": "U.S Geological Survey - ScienceBase", + "usgs_mission_area": "Water Resources", + "attached_files": [ + { + "file_id": 0, + "file_name": "Laborum-velit-in-minim.zip", + "file_size": "42.7 MB", + "description": "Ad qui Lorem ea voluptate" + }, + { + "file_id": 1, + "file_name": "Duis-qui-consectetur.xml", + "file_size": "8 KB", + "description": "Adipisicing deserunt anim reprehenderit" + } + ] + } +] \ No newline at end of file diff --git a/strudel_ex/gbif-app/public/data/default/explore-data/genomes.tsv b/strudel_ex/gbif-app/public/data/default/explore-data/genomes.tsv new file mode 100644 index 00000000..aec0ab8c --- /dev/null +++ b/strudel_ex/gbif-app/public/data/default/explore-data/genomes.tsv @@ -0,0 +1,319 @@ +Organism Proteome_ID Assembly Annotation Common Name Euk. BUSCO % Emb. BUSCO % Data Usage Policy +Acorus americanus v1.1 586 JGI JGI sweetflag 98.0 94.2 restricted +Agave tequilana var. Weber's Blue HAP1 v2.1 790 JGI JGI Weber's Blue agave 98.3 97.0 restricted +Agave tequilana var. Weber's Blue HAP2 v2.1 791 JGI JGI Weber's Blue agave 98.3 97.4 restricted +Alyssum linifolium v1.1 472 JGI JGI 98.7 98.5 restricted +Amaranthus hypochondriacus v2.1 459 BYU BYU grain amaranth 91.7 77.6 unrestricted +Amborella trichopoda v1.0 291 AGP AGP amborella 94.4 84.5 unrestricted +Amborella trichopoda var. SantaCruz_75 HAP1 v2.1 727 JGI JGI 99.0 93.5 restricted +Amborella trichopoda var. SantaCruz_75 HAP2 v2.1 728 JGI JGI 99.0 94.0 restricted +Anacardium occidentale v0.9 49 JGI JGI cashew 96.7 91.1 restricted +Ananas comosus v3 321 FAFU/UIUC FAFU/UIUC pineapple 92.1 89.3 unrestricted +Andropogon gerardi HAP1 v1.1 783 JGI JGI Big bluestem 98.7 99.7 restricted +Andropogon gerardi HAP2 v1.1 784 JGI JGI Big bluestem 98.7 99.7 restricted +Aquilegia coerulea v3.1 322 JGI JGI Colorado blue columbine 98.7 95.8 unrestricted +Arabidopsis halleri v1.1 264 JGI JGI 89.4 85.9 restricted +Arabidopsis halleri v2.1.0 765 MPIB MGPP-RUB 98.3 94.0 unrestricted +Arabidopsis lyrata v2.1 384 JGI MPIPZ Lyrate rockcress 98.0 98.2 unrestricted +Arabidopsis thaliana TAIR10 167 TAIR TAIR thale cress 99.0 99.3 unrestricted +Arabidopsis thaliana Araport11 447 TAIR Araport thale cress 98.7 99.3 unrestricted +Arachis hypogaea v1.0 530 PeanutBase PeanutBase peanut 97.0 92.8 unrestricted +Asparagus officinalis V1.1 498 UGA UGA garden asparagus 88.8 79.0 unrestricted +Beta vulgaris EL10_1.0 548 MSU MSU beet 94.7 89.2 unrestricted +Beta vulgaris ssp. vulgaris EL10.2_2 782 USDA JGI sugar beet EL10 96.7 92.2 unrestricted +Betula platyphylla v1.1 679 NEFU NEFU Asian white birch 93.7 92.4 unrestricted +Boechera stricta v1.2 278 JGI JGI Drummond's rockcress 96.0 97.4 unrestricted +Botryococcus braunii v2.1 502 JGI JGI 80.5 22.6 restricted +Brachypodium arbuscula BARB1 v3.1 720 JGI JGI 98.3 99.0 restricted +Brachypodium distachyon v3.1 314 JGI JGI purple false brome 98.3 98.6 unrestricted +Brachypodium distachyon v2.1 283 JGI JGI purple false brome 98.3 98.3 unrestricted +Brachypodium distachyon v3.2 556 JGI JGI purple false brome 98.3 99.3 restricted +Brachypodium distachyon ABR2 v1 337 JGI JGI purple false brome 98.0 97.4 unrestricted +Brachypodium distachyon ABR3 v1 343 JGI JGI purple false brome 98.7 97.4 unrestricted +Brachypodium distachyon ABR4 v1 364 JGI JGI purple false brome 97.7 97.2 unrestricted +Brachypodium distachyon ABR5 v1 379 JGI JGI purple false brome 97.4 96.4 unrestricted +Brachypodium distachyon ABR6 v1 336 JGI JGI purple false brome 98.0 97.9 unrestricted +Brachypodium distachyon ABR7 v1 369 JGI JGI purple false brome 97.7 98.1 unrestricted +Brachypodium distachyon ABR8 v1 356 JGI JGI purple false brome 93.1 91.5 unrestricted +Brachypodium distachyon ABR9 v1 333 JGI JGI purple false brome 97.7 96.8 unrestricted +Brachypodium distachyon Adi-10 v1 381 JGI JGI purple false brome 94.4 84.7 unrestricted +Brachypodium distachyon Adi-12 v1 359 JGI JGI purple false brome 96.7 95.8 unrestricted +Brachypodium distachyon Adi-2 v1 372 JGI JGI purple false brome 98.0 97.6 unrestricted +Brachypodium distachyon Arn1 v1 355 JGI JGI purple false brome 97.4 97.8 unrestricted +Brachypodium distachyon Bd1-1 v1 349 JGI JGI purple false brome 94.1 96.1 unrestricted +Brachypodium distachyon Bd1-1 v1.1 549 JGI JGI purple false brome 98.7 99.4 restricted +Brachypodium distachyon Bd18-1 v1 362 JGI JGI purple false brome 98.0 98.4 unrestricted +Brachypodium distachyon Bd2-3 v1 353 JGI JGI purple false brome 97.7 95.4 unrestricted +Brachypodium distachyon Bd21 AnntCtrl v1 331 JGI JGI purple false brome 97.7 98.1 unrestricted +Brachypodium distachyon Bd21 AsmbCtrl v1 361 JGI JGI purple false brome 97.7 97.1 unrestricted +Brachypodium distachyon Bd21-3 v1.1 460 JGI JGI purple false brome 98.0 98.0 restricted +Brachypodium distachyon Bd21-3 v1 378 JGI JGI purple false brome 97.4 96.7 unrestricted +Brachypodium distachyon Bd21-3 v1.2 537 JGI JGI purple false brome 98.3 99.0 restricted +Brachypodium distachyon Bd29-1 v1 346 JGI JGI purple false brome 94.7 93.6 unrestricted +Brachypodium distachyon Bd3-1 v1 328 JGI JGI purple false brome 86.8 85.6 unrestricted +Brachypodium distachyon Bd30-1 v1 344 JGI JGI purple false brome 97.0 96.0 unrestricted +Brachypodium distachyon Bd30-1 v1.1 515 JGI JGI purple false brome 98.1 98.1 restricted +Brachypodium distachyon BdTR10c v1 374 JGI JGI purple false brome 97.0 93.3 unrestricted +Brachypodium distachyon BdTR11a v1 380 JGI JGI purple false brome 98.0 95.9 unrestricted +Brachypodium distachyon BdTR11g v1 357 JGI JGI purple false brome 98.3 97.6 unrestricted +Brachypodium distachyon BdTR11i v1 363 JGI JGI purple false brome 98.0 97.4 unrestricted +Brachypodium distachyon BdTR12c v1 352 JGI JGI purple false brome 96.7 94.8 unrestricted +Brachypodium distachyon BdTR13a v1 334 JGI JGI purple false brome 98.7 97.8 unrestricted +Brachypodium distachyon BdTR13c v1 365 JGI JGI purple false brome 96.7 95.1 unrestricted +Brachypodium distachyon BdTR1i v1 345 JGI JGI purple false brome 98.3 97.8 unrestricted +Brachypodium distachyon BdTR2b v1 376 JGI JGI purple false brome 96.7 96.7 unrestricted +Brachypodium distachyon BdTR2g v1 367 JGI JGI purple false brome 95.7 95.3 unrestricted +Brachypodium distachyon BdTR3c v1 354 JGI JGI purple false brome 98.0 98.0 unrestricted +Brachypodium distachyon BdTR5i v1 370 JGI JGI purple false brome 96.4 94.1 unrestricted +Brachypodium distachyon BdTR7a v1 329 JGI JGI purple false brome 98.0 97.2 unrestricted +Brachypodium distachyon BdTR8i v1 348 JGI JGI purple false brome 97.7 97.2 unrestricted +Brachypodium distachyon BdTR9k v1 358 JGI JGI purple false brome 96.0 94.5 unrestricted +Brachypodium distachyon Bis-1 v1 338 JGI JGI purple false brome 97.7 96.9 unrestricted +Brachypodium distachyon Foz1 v1 366 JGI JGI purple false brome 98.3 96.8 unrestricted +Brachypodium distachyon Gaz-8 v1 339 JGI JGI purple false brome 88.8 75.0 unrestricted +Brachypodium distachyon Jer1 v1 375 JGI JGI purple false brome 97.7 96.5 unrestricted +Brachypodium distachyon Kah-1 v1 351 JGI JGI purple false brome 89.4 86.5 unrestricted +Brachypodium distachyon Kah-5 v1 342 JGI JGI purple false brome 98.3 97.8 unrestricted +Brachypodium distachyon Koz-1 v1 330 JGI JGI purple false brome 98.0 98.3 unrestricted +Brachypodium distachyon Koz-3 v1 368 JGI JGI purple false brome 94.7 95.6 unrestricted +Brachypodium distachyon Luc1 v1 347 JGI JGI purple false brome 98.3 97.8 unrestricted +Brachypodium distachyon Mig3 v1 377 JGI JGI purple false brome 98.0 97.4 unrestricted +Brachypodium distachyon Mon3 v1 350 JGI JGI purple false brome 98.0 96.6 unrestricted +Brachypodium distachyon Mur1 v1 373 JGI JGI purple false brome 95.7 96.2 unrestricted +Brachypodium distachyon Pangenome v1 335 JGI JGI purple false brome 98.7 98.7 unrestricted +Brachypodium distachyon Per1 v1 326 JGI JGI purple false brome 98.3 97.8 unrestricted +Brachypodium distachyon Ron2 v1 360 JGI JGI purple false brome 97.4 97.6 unrestricted +Brachypodium distachyon S8iic v1 340 JGI JGI purple false brome 97.7 97.5 unrestricted +Brachypodium distachyon Sig2 v1 371 JGI JGI purple false brome 98.7 96.7 unrestricted +Brachypodium distachyon Tek-2 v1 341 JGI JGI purple false brome 96.7 96.7 unrestricted +Brachypodium distachyon Tek-4 v1 332 JGI JGI purple false brome 82.2 75.1 unrestricted +Brachypodium distachyon Uni2 v1 327 JGI JGI purple false brome 97.7 97.5 unrestricted +Brachypodium hybridum v1.1 463 JGI JGI 97.7 99.4 unrestricted +Brachypodium hybridum Bhyb26 v2.1 693 JGI JGI 98.3 99.7 restricted +Brachypodium mexicanum v2.1 813 JGI 98.7 99.5 unrestricted +Brachypodium mexicanum v1.1 577 JGI JGI 98.7 99.5 unrestricted +Brachypodium stacei v1.1 316 JGI JGI 98.0 98.6 unrestricted +Brachypodium sylvaticum v1.1 490 JGI JGI 98.3 97.2 restricted +Brachypodium sylvaticum Ain-1 v2.1 721 JGI JGI 97.7 99.1 restricted +Brassica oleracea capitata v1.0 446 OCRI OCRI cabbage 88.8 78.4 unrestricted +Brassica rapa FPsc v1.3 277 JGI JGI turnip mustard 97.7 96.9 unrestricted +Brassica rapa ssp. trilocularis R500 v2.1 795 JGI JGI 98.3 99.0 restricted +Cakile maritima v1.1 481 JGI JGI european searocket 98.3 97.9 restricted +Capsella grandiflora v1.1 266 JGI JGI 94.1 94.6 unrestricted +Capsella rubella v1.1 474 JGI JGI Pink shepherd's purse 98.3 97.2 unrestricted +Carica papaya ASGPBv0.4 113 ASGPB ASGPB papaya 82.5 72.0 unrestricted +Carya illinoinensis v1.1 573 HA JGI pecan 98.7 97.8 unrestricted +Carya illinoinensis Elliott v1.1 562 HA HA pecan 96.4 94.4 unrestricted +Carya illinoinensis Lakota v1.1 561 HA HA pecan 98.3 97.5 unrestricted +Carya illinoinensis Pawnee v1.1 588 HA HA pecan 98.0 95.9 unrestricted +Castanea dentata v1.1 673 HA HA American chestnut 98.3 98.7 restricted +Castanea mollissima Mahogany HAP1 v1.1 733 HA HA Chinese chestnut 97.7 97.6 restricted +Castanea mollissima Mahogany HAP2 v1.1 729 HA HA Chinese chestnut 97.7 97.4 restricted +Castanea mollissima Nanking HAP1 v1.1 732 HA HA Chinese chestnut 98.0 98.1 restricted +Castanea mollissima Nanking HAP2 v1.1 731 HA HA Chinese chestnut 97.7 97.9 restricted +Caulanthus amplexicaulis v1.1 470 JGI JGI claspingleaf wild cabbage 98.7 98.8 restricted +Ceratodon purpureus GG1 v1.1 539 JGI JGI 96.7 69.1 unrestricted +Ceratodon purpureus R40 v1.1 538 JGI JGI 96.4 69.0 unrestricted +Ceratopteris richardii v2.1 676 JGI JGI 98.0 71.0 unrestricted +Cercis canadensis V3.1 705 JGI JGI eastern redbud 98.3 99.0 restricted +Cercis canadensis HAP2 V3.1 706 JGI JGI eastern redbud 98.0 99.0 restricted +Chasmanthium laxum v1.1 690 JGI JGI Slender wood oats 97.4 98.1 restricted +Chenopodium quinoa v1.0 392 KAUST KAUST quinoa 96.0 90.6 unrestricted +Chlamydomonas reinhardtii v5.6 281 JGI JGI green algae 96.0 27.6 unrestricted +Chlamydomonas reinhardtii CC-4532 v6.1 707 JGI JGI green algae 97.0 28.5 unrestricted +Chromochloris zofingiensis v5.2.3.2 461 UCLA UCLA 84.5 27.0 unrestricted +Cicer arietinum v1.0 492 CGIAR CGIAR chickpea 95.4 89.6 unrestricted +Cinnamomum kanehirae v3 531 BRCAS BRCAS stout camphor tree 93.1 89.8 unrestricted +Citrus clementina v1.0 182 JGI JGI clementine 96.7 94.6 unrestricted +Citrus sinensis v1.1 154 JGI JGI sweet orange 91.4 87.2 unrestricted +Cleome violacea v1.1 484 JGI JGI spider plant 98.7 97.6 restricted +Cleome violacea v2.1 585 JGI JGI spider plant 98.7 98.1 restricted +Coccomyxa subellipsoidea C-169 v2.0 227 JGI.FG JGI.FG 89.1 26.5 unrestricted +Coffea arabica v0.5 453 UCD UCD coffee 98.3 94.8 restricted +Corylus americana var. rush v1.1 835 JGI JGI American hazelnut Rush 98.7 98.8 unrestricted +Corylus americana var. winkler v1.1 834 JGI JGI American hazelnut Winkler 96.7 95.1 unrestricted +Corymbia citriodora v2.1 507 JGI JGI lemon-scented gum 95.1 95.1 unrestricted +Crambe hispanica v1.1 488 JGI JGI 98.3 97.8 restricted +Cucumis sativus v1.0 122 Roche/JGI Roche/JGI cucumber 95.0 89.0 unrestricted +Daucus carota v2.0 388 WISC WISC carrot 92.0 83.2 unrestricted +Descurainia sophioides v1.1 482 JGI JGI northern tansymustard 98.0 96.5 restricted +Dioscorea alata v1.1 504 JGI JGI yam 88.1 79.5 unrestricted +Dioscorea alata v2.1 550 UC Berkeley JGI yam 96.4 94.9 restricted +Diphasiastrum complanatum v3.1 723 JGI JGI 97.4 76.5 restricted +Diptychocarpus strictus v1.1 489 JGI JGI 98.0 93.9 restricted +Diptychocarpus strictus v2.1 582 JGI JGI 98.7 94.6 restricted +Dunaliella salina v1.0 325 JGI JGI 77.6 18.6 unrestricted +Eleusine coracana v1.1 560 UGA/MIPS UGA/MIPS finger millet 97.0 94.9 unrestricted +Eruca vesicaria v1.1 487 JGI JGI arugula 99.3 98.3 restricted +Eschscholzia californica var. Aurantiaca Orange King Plant1.1 HAP1 v1.1 828 JGI JGI California poppy 98.7 97.6 restricted +Eschscholzia californica var. Aurantiaca Orange King Plant1.1 HAP2 v1.1 827 JGI JGI California poppy 98.7 97.4 restricted +Eucalyptus grandis v2.0 297 JGI JGI eucalyptus 95.0 92.3 unrestricted +Euclidium syriacum v1.1 483 JGI JGI syrian mustard 97.7 96.7 restricted +Eutrema salsugineum v1.0 173 JGI JGI salt cress 98.7 98.4 unrestricted +Fragaria vesca v2.0.a2 501 HAU HAU woodland strawberry 96.4 95.8 unrestricted +Fragaria vesca v4.0.a2 677 UCD HAU woodland strawberry 97.7 97.8 unrestricted +Fragaria x ananassa v1.0.a1 675 UCD UCD strawberry 98.3 96.9 unrestricted +Fragaria x ananassa Royal Royce v1.0 701 UCDAVIS UCDAVIS allo-octoploid strawberry 97.7 97.4 restricted +Glycine max Wm82.a2.v1 275 JGI JGI soybean 98.3 97.4 unrestricted +Glycine max Wm82.a4.v1 508 JGI JGI soybean 98.3 97.6 unrestricted +Glycine max Fiskeby v1.1 678 HA JGI soybean 98.3 97.7 restricted +Glycine max Lee v1.1 510 JGI JGI soybean 97.3 97.3 restricted +Glycine max Wm82 ISU-01 v2.1 724 JGI JGI 98.3 97.7 restricted +Glycine soja v1.1 509 JGI JGI soybean 98.3 96.7 unrestricted +Gossypium barbadense v1.1 526 HA HA cotton 99.0 98.2 unrestricted +Gossypium darwinii v1.1 529 HA HA cotton 99.3 98.5 unrestricted +Gossypium hirsutum v3.1 578 HA HA upland cotton 99.0 98.6 restricted +Gossypium hirsutum v1.1 458 HA HA upland cotton 99.0 97.8 unrestricted +Gossypium hirsutum v2.1 527 HA HA upland cotton 99.0 98.5 unrestricted +Gossypium hirsutum CSX8308 v1.1 570 HA HA upland cotton 98.7 98.5 restricted +Gossypium hirsutum Coker v1.1 698 HA HA upland cotton 99.0 98.7 restricted +Gossypium hirsutum DeltaPearl v1.1 695 HA HA upland cotton 99.3 98.7 restricted +Gossypium hirsutum FM958 v1.1 697 HA HA upland cotton 99.0 98.5 restricted +Gossypium hirsutum UA48 v1.1 569 HA HA upland cotton 99.0 98.3 restricted +Gossypium hirsutum UGA230 v1.1 568 HA HA upland cotton 99.0 98.5 restricted +Gossypium mustelinum v1.1 524 HA HA cotton 99.3 98.3 unrestricted +Gossypium raimondii v2.1 221 JGI JGI cotton 98.3 97.4 unrestricted +Gossypium tomentosum v1.1 525 HA HA cotton 99.3 98.6 unrestricted +Helianthus annuus r1.2 494 INRA INRA sunflower 98.0 93.6 unrestricted +Hordeum vulgare r1 462 IBSC IBSC barley 91.4 84.7 unrestricted +Hordeum vulgare Morex V3 702 HA IPK Morex barley 92.1 94.7 unrestricted +Hydrangea quercifolia v1.1 589 HA HA oakleaf hydrangea 96.7 93.1 restricted +Iberis amara v1.1 485 JGI JGI rocket candytuft 98.3 96.5 restricted +Isatis tinctoria v1.1 475 JGI JGI dyer's woad 98.0 96.8 restricted +Joinvillea ascendens v1.1 587 JGI JGI `ohe 98.0 98.0 restricted +Kalanchoe fedtschenkoi v1.1 382 JGI JGI lavender scallops 96.7 89.5 unrestricted +Kalanchoe laxiflora v1.1 309 JGI JGI 98.7 94.3 restricted +Kalanchoe laxiflora FTBG2000359A v3.1 699 JGI JGI 98.7 93.2 restricted +Lactuca sativa V8 467 UCDavis UCDavis lettuce 96.4 92.5 unrestricted +Lens culinaris v1 718 USask USask 97.4 92.4 unrestricted +Lens ervoides v1 719 USask USask 96.7 92.7 unrestricted +Lepidium sativum v1.1 478 JGI JGI garden cress 98.7 98.0 restricted +Lindenbergia philippensis v1.1 689 JGI JGI 98.0 96.7 restricted +Linum usitatissimum v1.0 200 BGI BGI flax 97.7 92.1 unrestricted +Liriodendron tulipifera YP108A v1.1 766 JGI JGI 98.0 98.3 restricted +Liriodendron tulipifera YP108A alt v1.1 767 JGI JGI 95.7 94.7 restricted +Lotus japonicus Lj1.0v1 571 HAU HAU 98.3 96.7 unrestricted +Lunaria annua v1.1 476 JGI JGI annual honesty 98.7 97.6 restricted +Lupinus albus v1 567 PeretLab PeretLab white lupine 97.0 95.0 unrestricted +Malcolmia maritima v1.1 477 JGI JGI Virginia stock 99.0 98.8 restricted +Malus domestica v1.1 491 AGE AGE apple 96.4 96.8 restricted +Manihot esculenta v6.1 305 JGI JGI cassava 97.7 95.3 unrestricted +Manihot esculenta v7.1 520 UC Berkeley JGI cassava 98.7 98.1 unrestricted +Manihot esculenta v8.1 671 UCB JGI cassava 98.3 98.7 unrestricted +Marchantia polymorpha v3.1 320 JGI JGI common liverwort 97.7 66.7 unrestricted +Medicago truncatula Mt4.0v1 285 JCVI JCVI barrel medic 97.4 93.6 unrestricted +Micromonas pusilla CCMP1545 v3.0 228 JGI.FG JGI.FG 87.5 21.1 unrestricted +Micromonas sp RCC299 v3.0 229 JGI.FG JGI.FG 89.8 22.7 unrestricted +Mimulus guttatus v2.0 256 JGI JGI monkey flower 98.0 94.5 unrestricted +Mimulus guttatus NONTOL v3.1 506 JGI JGI monkey flower 91.9 91.9 restricted +Mimulus guttatus NONTOL v4.0 553 JGI JGI monkey flower 95.7 91.8 restricted +Mimulus guttatus TOL v3.1 505 JGI JGI monkey flower 93.0 93.0 restricted +Mimulus guttatus TOL v5.0 551 JGI JGI monkey flower 96.0 93.1 restricted +Miscanthus sinensis v7.1 497 JGI JGI Chinese silver grass 97.7 97.6 unrestricted +Musa acuminata v1 304 Genoscope/Cirad Genoscope/Cirad banana 94.1 86.7 unrestricted +Myagrum perfoliatum v1.1 471 JGI JGI bird's eye cress 98.3 97.6 restricted +Myagrum perfoliatum v2.1 583 JGI JGI bird's eye cress 98.0 98.5 restricted +Nymphaea colorata v1.2 566 Zhejiang University JGI water lilly 98.0 92.5 unrestricted +Olea europaea v1.0 451 OGC OGC olive 90.1 79.9 unrestricted +Oropetium thomaeum v1.0 386 DanforthCenter DanforthCenter 84.2 70.2 unrestricted +Oryza sativa v7.0 323 MSU MSU rice 95.0 95.6 unrestricted +Oryza sativa Kitaake v3.1 499 JGI JGI rice 98.3 99.1 unrestricted +Ostreococcus lucimarinus v2.0 231 JGI.FG JGI.FG 84.5 20.2 unrestricted +Panicum hallii v2.0 308 JGI JGI Hall's panicgrass 97.4 96.6 unrestricted +Panicum hallii v3.1 495 JGI JGI Hall's panicgrass 97.4 98.1 unrestricted +Panicum hallii v3.2 590 JGI JGI Hall's panicgrass 97.7 99.3 unrestricted +Panicum hallii HAL v2.1 496 JGI JGI Hall's panicgrass 98.0 98.9 unrestricted +Panicum hallii HAL v2.2 591 JGI JGI Hall's panicgrass 98.3 99.2 unrestricted +Panicum virgatum v4.1 450 JGI JGI switchgrass 98.0 98.3 unrestricted +Panicum virgatum v5.1 516 JGI JGI switchgrass 98.3 99.4 unrestricted +Panicum virgatum var. AP13 HAP1 v6.1 772 JGI JGI switchgrass 98.3 99.7 restricted +Panicum virgatum var. AP13 HAP2 v6.1 773 JGI JGI switchgrass 98.3 99.7 restricted +Paspalum vaginatum v3.1 672 HA JGI biscuit grass 97.7 98.9 unrestricted +Pharus latifolius v1.1 680 JGI JGI 98.0 98.4 restricted +Phaseolus acutifolius v1.0 580 HA MSU tepary bean 97.4 94.7 unrestricted +Phaseolus acutifolius WLD v2.0 581 U Saskatchewan MSU tepary bean 96.4 95.8 unrestricted +Phaseolus lunatus V1 563 Uniandes Uniandes lima bean 96.4 93.7 restricted +Phaseolus vulgaris v2.1 442 JGI JGI common bean 97.7 96.4 restricted +Phaseolus vulgaris 5-593 v1.1 696 HA HA common bean 98.3 96.0 restricted +Phaseolus vulgaris Labor Ovalle v1.1 670 HA HA common bean 98.3 95.1 restricted +Phaseolus vulgaris UI111 v1.1 534 JGI JGI common bean 98.3 96.9 restricted +Physcomitrium patens v3.3 318 COSMOSS COSMOSS moss Physcomitrella patens 98.7 67.9 unrestricted +Poncirus trifoliata v1.3.1 565 JGI JGI hardy orange 97.4 97.2 unrestricted +Populus deltoides WV94 v2.1 445 JGI JGI eastern cottonwood 97.7 94.4 restricted +Populus nigra x maximowiczii NM6 v1.1 688 JGI JGI hybrid poplar 99.3 98.6 restricted +Populus tremula x Populus alba HAP1 v5.1 717 JGI JGI 98.7 98.7 restricted +Populus tremula x Populus alba HAP2 v5.1 716 JGI JGI 98.3 98.7 restricted +Populus trichocarpa v3.0 210 JGI JGI western poplar 98.7 97.6 unrestricted +Populus trichocarpa v3.1 444 JGI JGI western poplar 98.7 97.4 unrestricted +Populus trichocarpa v4.1 533 JGI JGI western poplar 98.7 98.9 unrestricted +Populus trichocarpa Stettler14 v1.1 532 JGI JGI western poplar 98.3 98.3 restricted +Porphyra umbilicalis v1.5 456 JGI JGI seaweed 62.0 7.7 unrestricted +Portulaca amilis v1.0 692 Yale Yale Paraguayan purslane 93.7 89.0 unrestricted +Prunus persica v2.1 298 JGI JGI peach 99.0 98.8 unrestricted +Quercus rubra v2.1 687 HA HA northern red oak 97.7 97.4 restricted +Ricinus communis v0.1 119 TIGR TIGR castor bean plant 94.1 90.0 unrestricted +Rorippa islandica v1.1 473 JGI JGI marsh cress 98.7 98.1 restricted +Saccharum officinarum x spontaneum R570 v2.1 771 JGI JGI sugarcane 98.7 99.8 restricted +Salix purpurea v1.0 289 JGI/JCVI JGI/JCVI shrub willow 98.7 97.0 unrestricted +Salix purpurea v5.1 519 JGI JGI shrub willow 98.3 97.0 unrestricted +Salix purpurea Fish Creek v3.1 518 JGI JGI shrub willow 98.3 97.2 unrestricted +Schrenkiella parvula v2.2 574 LSU LSU 98.3 96.8 unrestricted +Selaginella moellendorffii v1.0 91 JGI JGI spikemoss 95.7 61.8 unrestricted +Setaria italica v2.2 312 JGI JGI foxtail millet 98.7 98.4 unrestricted +Setaria viridis v1.1 311 JGI JGI green foxtail millet 97.7 97.5 unrestricted +Setaria viridis v2.1 500 JGI JGI green foxtail millet 98.0 99.0 unrestricted +Setaria viridis v4.1 726 JGI JGI green foxtail millet 98.3 99.2 restricted +Sinapis alba v1.1 480 JGI JGI white mustard 98.0 98.2 restricted +Sinapis alba v3.1 584 JGI JGI white mustard 98.3 98.1 restricted +Solanum lycopersicum ITAG2.4 390 iTAG iTAG tomato 96.3 95.5 unrestricted +Solanum lycopersicum ITAG3.2 514 iTAG ITAG tomato 95.7 94.5 unrestricted +Solanum lycopersicum ITAG4.0 691 SGN ITAG tomato 95.4 93.6 unrestricted +Solanum lycopersicum ITAG5.0 796 AGI_CAAS_Shenzhen AGI_CAAS_Shenzhen tomato 94.7 93.5 restricted +Solanum tuberosum v4.03 448 MSU MSU potato 87.1 85.5 unrestricted +Solanum tuberosum v6.1 686 MSU MSU potato 98.0 95.1 unrestricted +Sorghum bicolor v3.1.1 454 JGI JGI sorghum 98.3 98.3 unrestricted +Sorghum bicolor v5.1 730 JGI JGI sorghum 98.7 99.7 restricted +Sorghum bicolor BTx642 v1.1 564 JGI JGI sorghum 98.3 99.4 restricted +Sorghum bicolor RTx430 v2.1 552 JGI JGI sorghum 98.0 99.2 restricted +Sorghum bicolor Rio v2.1 468 JGI JGI sorghum 97.0 97.0 unrestricted +Sorghum bicolor SC187 v1.1 694 JGI JGI sorghum 98.0 99.4 restricted +Sorghum bicolor Wray v1.1 781 JGI JGI 98.0 99.4 restricted +Sphagnum fallax v0.5 310 JGI JGI flat-topped bogmoss 98.0 71.1 unrestricted +Sphagnum fallax v1.1 522 JGI JGI flat-topped bogmoss 98.3 71.3 unrestricted +Sphagnum magellanicum v1.1 521 JGI JGI magellanic bogmoss Sphagnum divinum 98.3 71.6 unrestricted +Spinacia oleracea Spov3 575 UCD UCD spinach 92.7 83.9 unrestricted +Spirodela polyrhiza v2 290 MIPS MIPS greater duckweed 92.7 79.6 unrestricted +Stanleya pinnata v1.1 486 JGI JGI Princes Plume 82.8 71.2 restricted +Theobroma cacao v1.1 233 CGD CGD cocoa bean 98.3 97.7 unrestricted +Theobroma cacao v2.1 523 JGI JGI cocoa bean 98.3 98.1 restricted +Thinopyrum intermedium v2.1 503 JGI JGI intermediate wheatgrass 97.7 97.4 restricted +Thinopyrum intermedium v3.1 770 JGI JGI intermediate wheatgrass 98.3 99.7 unrestricted +Thlaspi arvense v1.1 479 JGI JGI field pennycress 98.3 97.5 restricted +Thuja plicata v3.1 572 UBC JGI western red-cedar 96.7 84.5 unrestricted +Trifolium pratense v2 385 TGAC TGAC red clover 93.4 87.6 unrestricted +Triticum aestivum v2.2 296 MIPS MIPS wheat 92.7 89.4 unrestricted +Triticum aestivum cv. Chinese Spring v2.1 725 IWGSC IWGSC bread wheat 98.0 99.3 unrestriced +Urochloa fusca v1.1 669 JGI JGI 95.4 97.2 restricted +Vaccinium darrowii v1.2 700 USDA/UTK USDA/UTK evergreen blueberry 93.7 90.1 unrestricted +Vigna unguiculata v1.1 469 UCR JGI cowpea 98.3 95.9 unrestricted +Vigna unguiculata v1.2 540 UCR JGI cowpea 98.7 96.0 restricted +Vigna unguiculata CB5-2 v1.1 545 UCR JGI cowpea 97.7 95.1 restricted +Vigna unguiculata Sanzi v1.1 544 UCR JGI cowpea 96.7 95.6 restricted +Vigna unguiculata Suvita2 v1.1 541 UCR JGI cowpea 98.0 95.3 restricted +Vigna unguiculata TZ30 v1.2 558 UCR JGI cowpea 97.7 95.3 restricted +Vigna unguiculata UCR779 v1.1 543 UCR JGI cowpea 97.0 95.6 restricted +Vigna unguiculata ZN016 v1.2 559 UCR JGI cowpea 96.7 95.6 restricted +Vitis vinifera v2.1 457 CRIBI CRIBI grape vine 97.7 95.8 unrestricted +Volvox carteri v2.1 317 JGI JGI volvox 94.7 26.0 unrestricted +Zea mays RefGen_V4 493 CSHL CSHL maize 97.7 95.2 unrestricted +Zea mays Zm-B73-REFERENCE-NAM-5.0.55 833 MaizeGDB nam-genomes maize 97.0 96.4 unrestricted +Zea mays B84 v1.2 681 JGI JGI maize 98.7 99.2 unrestricted +Zea mays LH145 v1.2 682 JGI JGI maize 99.0 99.1 unrestricted +Zea mays NKH8431 v1.2 683 JGI JGI maize 98.7 99.2 unrestricted +Zea mays PH207 v1.1 443 UMN UMN maize 95.0 87.9 unrestricted +Zea mays PHB47 v1.1 513 JGI JGI maize 97.7 97.4 unrestricted +Zea mays PHB47 v1.2 684 JGI JGI maize 98.7 99.0 unrestricted +Zea mays PHJ40 v1.1 512 JGI JGI maize 98.7 98.0 unrestricted +Zea mays PHJ40 v1.2 685 JGI JGI maize 98.7 99.2 unrestricted +Zostera marina v2.2 324 ORCAE ORCAE common eelgrass 97.0 85.0 unrestricted +Zostera marina v3.1 668 JGI Ghent common eelgrass 96.0 85.3 unrestricted diff --git a/strudel_ex/gbif-app/public/data/default/monitor-activities/experiment_detail.json b/strudel_ex/gbif-app/public/data/default/monitor-activities/experiment_detail.json new file mode 100644 index 00000000..cfeebb03 --- /dev/null +++ b/strudel_ex/gbif-app/public/data/default/monitor-activities/experiment_detail.json @@ -0,0 +1,92 @@ +{ + "id": 45, + "experiment_name": "Experiment Cricket", + "start_time": "12/16/2023, 3:01:07 PM", + "end_time": null, + "status": "Running", + "events": [ + { + "id": 10, + "event_type": "Chirp", + "event_time": "12/17/2023, 9:09:15 PM", + "confidence": 97 + }, + { + "id": 9, + "event_type": "Chirp", + "event_time": "12/17/2023, 8:11:19 PM", + "confidence": 98 + }, + { + "id": 8, + "event_type": "Hop", + "event_time": "12/17/2023, 4:33:53 PM", + "confidence": 64 + }, + { + "id": 7, + "event_type": "Hop", + "event_time": "12/17/2023, 11:09:15 AM", + "confidence": 97 + }, + { + "id": 6, + "event_type": "Hop", + "event_time": "12/17/2023, 11:02:05 AM", + "confidence": 99 + }, + { + "id": 5, + "event_type": "Hop", + "event_time": "12/17/2023, 7:23:32 AM", + "confidence": 75 + }, + { + "id": 4, + "event_type": "Chirp", + "event_time": "12/17/2023, 7:03:44 PM", + "confidence": 99 + }, + { + "id": 3, + "event_type": "Chirp", + "event_time": "12/17/2023, 3:26:42 PM", + "confidence": 97 + }, + { + "id": 2, + "event_type": "Chirp", + "event_time": "12/16/2023, 11:55:21 PM", + "confidence": 97 + }, + { + "id": 1, + "event_type": "Chirp", + "event_time": "12/16/2023, 10:08:10 PM", + "confidence": 98 + }, + { + "id": 0, + "event_type": "Chirp", + "event_time": "12/16/2023, 9:45:10 PM", + "confidence": 97 + } + ], + "notes": [ + { + "id": 2, + "created_time": "12/17/2023, 4:00:29 PM", + "content": "Aute amet aute irure in consectetur enim incididunt aute consectetur." + }, + { + "id": 1, + "created_time": "12/17/2023, 7:00:25 AM", + "content": "Labore elit cupidatat eiusmod sunt aliquip pariatur quis." + }, + { + "id": 0, + "created_time": "12/16/2023, 11:59:20 PM", + "content": "Culpa id officia laborum cupidatat dolor mollit." + } + ] +} \ No newline at end of file diff --git a/strudel_ex/gbif-app/public/data/default/monitor-activities/experiments.json b/strudel_ex/gbif-app/public/data/default/monitor-activities/experiments.json new file mode 100644 index 00000000..3c3a0f00 --- /dev/null +++ b/strudel_ex/gbif-app/public/data/default/monitor-activities/experiments.json @@ -0,0 +1,303 @@ +[ + { + "id": 45, + "experiment_name": "Experiment Cricket", + "start_time": "12/16/2023, 3:01:07 PM", + "end_time": null, + "status": "Running" + }, + { + "id": 44, + "experiment_name": "Experiment Mouse", + "start_time": "12/15/2023, 1:40:10 PM", + "end_time": null, + "status": "Running" + }, + { + "id": 8, + "experiment_name": "Experiment Fox", + "start_time": "6/27/2023, 1:42:11 PM", + "end_time": "6/30/2023, 5:15:29 AM", + "status": "Complete" + }, + { + "id": 14, + "experiment_name": "Experiment Elephant", + "start_time": "10/15/2023, 1:42:11 PM", + "end_time": "10/18/2023, 5:15:29 AM", + "status": "Interrupted" + }, + { + "id": 30, + "experiment_name": "Experiment Hippo", + "start_time": "6/27/2023, 1:42:11 PM", + "end_time": "6/30/2023, 5:15:29 AM", + "status": "Interrupted" + }, + { + "id": 43, + "experiment_name": "Experiment Cherry", + "start_time": "5/20/2023, 9:34:45 AM", + "end_time": "5/22/2023, 2:46:01 PM", + "status": "Complete" + }, + { + "id": 23, + "experiment_name": "Experiment Lime", + "start_time": "4/22/2023, 9:34:45 AM", + "end_time": "4/24/2023, 2:46:01 PM", + "status": "Complete" + }, + { + "id": 39, + "experiment_name": "Experiment Giraffe", + "start_time": "4/28/2023, 9:34:45 AM", + "end_time": "4/30/2023, 2:46:01 PM", + "status": "Complete" + }, + { + "id": 26, + "experiment_name": "Experiment Horse", + "start_time": "2/17/2023, 1:42:11 PM", + "end_time": "2/20/2023, 5:15:29 AM", + "status": "Complete" + }, + { + "id": 11, + "experiment_name": "Experiment Sloth", + "start_time": "1/14/2023, 9:34:45 AM", + "end_time": "1/16/2023, 2:46:01 PM", + "status": "Complete" + }, + { + "id": 35, + "experiment_name": "Experiment Gargoyle", + "start_time": "7/10/2023, 9:34:45 AM", + "end_time": "7/12/2023, 2:46:01 PM", + "status": "Complete" + }, + { + "id": 19, + "experiment_name": "Experiment Lion", + "start_time": "8/6/2023, 9:34:45 AM", + "end_time": "8/8/2023, 2:46:01 PM", + "status": "Complete" + }, + { + "id": 3, + "experiment_name": "Experiment Jasmine", + "start_time": "6/5/2023, 9:34:45 AM", + "end_time": "6/7/2023, 2:46:01 PM", + "status": "Complete" + }, + { + "id": 6, + "experiment_name": "Experiment Crocodile", + "start_time": "9/20/2022, 1:42:11 PM", + "end_time": "9/23/2022, 5:15:29 AM", + "status": "Interrupted" + }, + { + "id": 32, + "experiment_name": "Experiment Lemon", + "start_time": "9/6/2022, 11:27:18 AM", + "end_time": "9/8/2022, 3:48:52 AM", + "status": "Complete" + }, + { + "id": 17, + "experiment_name": "Experiment Iceberg", + "start_time": "7/8/2022, 9:11:04 AM", + "end_time": "7/10/2022, 11:27:39 AM", + "status": "Failed" + }, + { + "id": 41, + "experiment_name": "Experiment Diamond", + "start_time": "6/19/2022, 9:11:04 AM", + "end_time": "6/21/2022, 11:27:39 AM", + "status": "Failed" + }, + { + "id": 21, + "experiment_name": "Experiment Ruby", + "start_time": "6/12/2022, 9:11:04 AM", + "end_time": "6/14/2022, 11:27:39 AM", + "status": "Failed" + }, + { + "id": 27, + "experiment_name": "Experiment Pigeon", + "start_time": "5/29/2022, 11:27:18 AM", + "end_time": "5/31/2022, 3:48:52 AM", + "status": "Complete" + }, + { + "id": 13, + "experiment_name": "Experiment Oregono", + "start_time": "5/9/2022, 9:11:04 AM", + "end_time": "5/11/2022, 11:27:39 AM", + "status": "Failed" + }, + { + "id": 28, + "experiment_name": "Experiment Otter", + "start_time": "5/1/2022, 11:27:18 AM", + "end_time": "5/3/2022, 3:48:52 AM", + "status": "Complete" + }, + { + "id": 0, + "experiment_name": "Experiment Gecko", + "start_time": "3/14/2022, 11:27:18 AM", + "end_time": "3/16/2022, 3:48:52 AM", + "status": "Complete" + }, + { + "id": 25, + "experiment_name": "Experiment Banana", + "start_time": "3/5/2022, 9:11:04 AM", + "end_time": "3/7/2022, 11:27:39 AM", + "status": "Failed" + }, + { + "id": 34, + "experiment_name": "Experiment Thunder", + "start_time": "12/7/2021, 1:42:11 PM", + "end_time": "12/10/2021, 5:15:29 AM", + "status": "Interrupted" + }, + { + "id": 15, + "experiment_name": "Experiment Tornado", + "start_time": "12/1/2021, 9:34:45 AM", + "end_time": "12/3/2021, 2:46:01 PM", + "status": "Complete" + }, + { + "id": 9, + "experiment_name": "Experiment Wind", + "start_time": "11/13/2021, 1:42:11 PM", + "end_time": "11/16/2021, 5:15:29 AM", + "status": "Interrupted" + }, + { + "id": 29, + "experiment_name": "Experiment Pufferfish", + "start_time": "10/14/2021, 9:11:04 AM", + "end_time": "10/16/2021, 11:27:39 AM", + "status": "Failed" + }, + { + "id": 42, + "experiment_name": "Experiment Strawberry", + "start_time": "9/26/2021, 1:42:11 PM", + "end_time": "9/29/2021, 5:15:29 AM", + "status": "Interrupted" + }, + { + "id": 22, + "experiment_name": "Experiment Grape", + "start_time": "9/19/2021, 1:42:11 PM", + "end_time": "9/22/2021, 5:15:29 AM", + "status": "Interrupted" + }, + { + "id": 10, + "experiment_name": "Experiment Lightning", + "start_time": "8/30/2021, 1:42:11 PM", + "end_time": "9/2/2021, 5:15:29 AM", + "status": "Interrupted" + }, + { + "id": 2, + "experiment_name": "Experiment Leopard", + "start_time": "8/22/2021, 1:42:11 PM", + "end_time": "8/25/2021, 5:15:29 AM", + "status": "Interrupted" + }, + { + "id": 38, + "experiment_name": "Experiment Donkey", + "start_time": "8/15/2021, 1:42:11 PM", + "end_time": "8/18/2021, 5:15:29 AM", + "status": "Interrupted" + }, + { + "id": 7, + "experiment_name": "Experiment Walrus", + "start_time": "5/15/2021, 9:34:45 AM", + "end_time": "5/17/2021, 2:46:01 PM", + "status": "Complete" + }, + { + "id": 16, + "experiment_name": "Experiment Basil", + "start_time": "3/24/2020, 11:27:18 AM", + "end_time": "3/26/2020, 3:48:52 AM", + "status": "Complete" + }, + { + "id": 18, + "experiment_name": "Experiment Guava", + "start_time": "11/28/2020, 9:11:04 AM", + "end_time": "11/30/2020, 11:27:39 AM", + "status": "Interrupted" + }, + { + "id": 5, + "experiment_name": "Experiment Kiwi", + "start_time": "11/7/2020, 9:11:04 AM", + "end_time": "11/9/2020, 11:27:39 AM", + "status": "Failed" + }, + { + "id": 12, + "experiment_name": "Experiment Shark", + "start_time": "6/25/2020, 11:27:18 AM", + "end_time": "6/27/2020, 3:48:52 AM", + "status": "Complete" + }, + { + "id": 33, + "experiment_name": "Experiment Turtle", + "start_time": "5/2/2020, 9:11:04 AM", + "end_time": "5/4/2020, 11:27:39 AM", + "status": "Failed" + }, + { + "id": 1, + "experiment_name": "Experiment Dragon", + "start_time": "4/28/2020, 9:11:04 AM", + "end_time": "4/30/2020, 11:27:39 AM", + "status": "Failed" + }, + { + "id": 31, + "experiment_name": "Experiment Lizard", + "start_time": "2/20/2020, 9:34:45 AM", + "end_time": "2/22/2020, 2:46:01 PM", + "status": "Complete" + }, + { + "id": 20, + "experiment_name": "Experiment Apple", + "start_time": "1/29/2020, 11:27:18 AM", + "end_time": 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"end_date": "2010-12-31", + "citation": "Lindsey, B.D., Johnson, T.D., and Belitz, Kenneth, 2018, Data from Decadal Change in Groundwater Quality Web Site, 1988-2012: U.S. Geological Survey data release, https://doi.org/10.5066/F7PC30WD.", + "doi": "10.5066/F7PC30WD", + "summary": "Groundwater quality data were collected in 5,000 wells between 1988-2001 by the National Water-Quality Assessment Project. About 1,500 of these wells were sampled again between 2002-2012 to evaluate decadal changes in groundwater quality. Monitoring wells, domestic supply wells, and some public supply wells were included in this study.", + "tags": [ "NAWQA", "National Water Quality Program", "USGS Science Data Catalog (SDC)", "Cycle 3", "groundwater quality", "trends", "water quality"], + "category": "Groundwater", + "purpose": "Data were collected as a part of the NAWQA Land use studies or Major aquifer studies. Initially data were collected to characterize the quality of shallow and medium depths of groundwater in the nation. Subsequent samples were collected to evaluate changes in concentrations over a decadal time span. Mapping criteria and benchmarks: The NAWQA Project has developed an interactive mapping tool that displays decadal changes in concentrations.", + "point_of_contact": "Bruce D. Lindsey", + "originator": "Bruce D. Lindsey, Tyler D Johnson", + "metadata_contact": "Jennifer B Sharpe", + "publisher": "U.S Geological Survey", + "distributor": "U.S Geological Survey - ScienceBase", + "usgs_mission_area": "Water Resources", + "communities": [ + { + "title": "USGS Data Release Products", + "url": "#" + }, + { + "title": "National Water Quality Assessment Project", + "url": "#" + } + ], + "associated_projects": [ + { + "title": "Data from Decadal Change in Groundwater Quality Web Site, 1988-2016", + "url": "#" + } + ], + "attached_files": [ + { + "file_id": 0, + "file_name": "Laborum-velit-in-minim.zip", + "file_size": "42.7 MB", + "description": "Ad qui Lorem ea voluptate" + }, + { + "file_id": 1, + "file_name": "Duis-qui-consectetur.xml", + "file_size": "8 KB", + "description": "Adipisicing deserunt anim reprehenderit" + } + ] + }, + { + "id": 1, + "title": "Fire perimeter data for the 1987 Black Dragon Fire in China (1987)", + "publication_date": "2023-01-01", + "start_date": "2010-01-01", + "end_date": "2021-01-01", + "citation": "Labore proident do aute et esse adipisicing veniam eiusmod culpa pariatur sunt officia.", + "doi": "0000000000", + "summary": "Geospatial data were developed to characterize pre-fire biomass, burn severity, and biomass consumed for the Black Dragon Fire that burned in northern China in 1987. Ipsum id laborum et dolor laboris ut sint officia voluptate. Ipsum consectetur fugiat laboris sit Lorem duis minim fugiat.", + "tags": ["Boreal forest", "Carbon and greenhouse gas emissions", "China", "Ecology", "Forestry"], + "category": "Fires", + "purpose": "Nostrud ullamco ea id consequat ex. Tempor deserunt laborum amet ex quis culpa laborum Lorem Lorem sunt do sit excepteur. Sunt ea velit non magna ut Lorem magna eu aute aliquip.", + "point_of_contact": "Ernest O. Lawrence", + "originator": "Darleane C. Hoffman", + "metadata_contact": "Glenn T. 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Ipsum consectetur fugiat laboris sit Lorem duis minim fugiat.", + "tags": ["Louisiana", "Mississippi", "Texas", "Floods", "USGS Data Catalog (SDC)"], + "category": "Floods", + "purpose": "Nostrud ullamco ea id consequat ex. Tempor deserunt laborum amet ex quis culpa laborum Lorem Lorem sunt do sit excepteur. Sunt ea velit non magna ut Lorem magna eu aute aliquip.", + "point_of_contact": "Ernest O. Lawrence", + "originator": "Darleane C. Hoffman", + "metadata_contact": "Glenn T. Seaborg", + "publisher": "U.S Geological Survey", + "distributor": "U.S Geological Survey - ScienceBase", + "usgs_mission_area": "Water Resources", + "communities": [ + { + "title": "Veniam fugiat commodo esse ex sunt sit enim.", + "url": "#" + }, + { + "title": "Duis amet voluptate adipisicing irure officia excepteur consectetur.", + "url": "#" + } + ], + "associated_projects": [ + { + "title": "Data from Decadal Change in Groundwater Quality Web Site, 1988-2016", + "url": "#" + } + ], + "attached_files": [ + { + "file_id": 0, + "file_name": "Laborum-velit-in-minim.zip", + "file_size": "42.7 MB", + "description": "Ad qui Lorem ea voluptate" + }, + { + "file_id": 1, + "file_name": "Duis-qui-consectetur.xml", + "file_size": "8 KB", + "description": "Adipisicing deserunt anim reprehenderit" + } + ] + }, + { + "id": 3, + "title": "Bathymetric survey of the Brandon Road Dam Spillway, Joliet, Illinois (May 2015)", + "publication_date": "2023-01-01", + "start_date": "2010-01-01", + "end_date": "2021-01-01", + "citation": "Labore proident do aute et esse adipisicing veniam eiusmod culpa pariatur sunt officia.", + "doi": "0000000000", + "summary": "Bathymetric survey data of the Brandon Road Dam spillway was collected on May 27 and May 28, 2015 by the US Geological Survey (USGS) using Trimble Real-Time Kinematic Global Ipsum id laborum et dolor laboris ut sint officia voluptate. Ipsum consectetur fugiat laboris sit Lorem duis minim fugiat.", + "tags": ["Dam", "GPS measurement", "Brandon Road Lock and Dam", "Floods", "USGS Data Catalog (SDC)"], + "category": "Groundwater", + "purpose": "Nostrud ullamco ea id consequat ex. Tempor deserunt laborum amet ex quis culpa laborum Lorem Lorem sunt do sit excepteur. Sunt ea velit non magna ut Lorem magna eu aute aliquip.", + "point_of_contact": "Ernest O. Lawrence", + "originator": "Darleane C. Hoffman", + "metadata_contact": "Glenn T. Seaborg", + "publisher": "U.S Geological Survey", + "distributor": "U.S Geological Survey - ScienceBase", + "usgs_mission_area": "Water Resources", + "communities": [ + { + "title": "Veniam fugiat commodo esse ex sunt sit enim.", + "url": "#" + }, + { + "title": "Duis amet voluptate adipisicing irure officia excepteur consectetur.", + "url": "#" + } + ], + "associated_projects": [ + { + "title": "Data from Decadal Change in Groundwater Quality Web Site, 1988-2016", + "url": "#" + } + ], + "attached_files": [ + { + "file_id": 0, + "file_name": "Laborum-velit-in-minim.zip", + "file_size": "42.7 MB", + "description": "Ad qui Lorem ea voluptate" + }, + { + "file_id": 1, + "file_name": "Duis-qui-consectetur.xml", + "file_size": "8 KB", + "description": "Adipisicing deserunt anim reprehenderit" + } + ] + }, + { + "id": 4, + "title": "Data from mercury intrusion porosimetry conducted on samples of a mudstone underlying the Naval Air Warfare Center, West Trenton, New Jersey", + "publication_date": "2023-01-01", + "start_date": "2010-01-01", + "end_date": "2021-01-01", + "citation": "Labore proident do aute et esse adipisicing veniam eiusmod culpa pariatur sunt officia.", + "doi": "0000000000", + "summary": "This data set presents the results of conducting Mercury Intrusion Porosimetry on core samples of the mudstone underlying the Naval Air Warfare Center, West Trenton, New Jersey Ipsum id laborum et dolor laboris ut sint officia voluptate. Ipsum consectetur fugiat laboris sit Lorem duis minim fugiat.", + "tags": ["Sedimentary rock", "porosity", "West Trenton", "USGS Data Catalog (SDC)"], + "category": "Groundwater", + "purpose": "Nostrud ullamco ea id consequat ex. Tempor deserunt laborum amet ex quis culpa laborum Lorem Lorem sunt do sit excepteur. Sunt ea velit non magna ut Lorem magna eu aute aliquip.", + "point_of_contact": "Ernest O. Lawrence", + "originator": "Darleane C. Hoffman", + "metadata_contact": "Glenn T. Seaborg", + "publisher": "U.S Geological Survey", + "distributor": "U.S Geological Survey - ScienceBase", + "usgs_mission_area": "Water Resources", + "communities": [ + { + "title": "Veniam fugiat commodo esse ex sunt sit enim.", + "url": "#" + }, + { + "title": "Duis amet voluptate adipisicing irure officia excepteur consectetur.", + "url": "#" + } + ], + "associated_projects": [ + { + "title": "Data from Decadal Change in Groundwater Quality Web Site, 1988-2016", + "url": "#" + } + ], + "attached_files": [ + { + "file_id": 0, + "file_name": "Laborum-velit-in-minim.zip", + "file_size": "42.7 MB", + "description": "Ad qui Lorem ea voluptate" + }, + { + "file_id": 1, + "file_name": "Duis-qui-consectetur.xml", + "file_size": "8 KB", + "description": "Adipisicing deserunt anim reprehenderit" + } + ] + }, + { + "id": 5, + "title": "Discovery of Two Biological Mechanisms for Acetylene Metabolism in a Single Organism", + "publication_date": "2023-01-01", + "start_date": "2010-01-01", + "end_date": "2021-01-01", + "citation": "Labore proident do aute et esse adipisicing veniam eiusmod culpa pariatur sunt officia.", + "doi": "0000000000", + "summary": "Acetylene fermentation assays, nitrogen fixation assays, and growth studies were performed with Pelobacter sp. strain SFB93 and Pelobacter acetylenicus DSM3246. Data includes concentrations of acetylene and ethylene over time, and growth measured with OD680 and cell counts.", + "tags": ["Genetics", "Ecology", "Environmental health", "Geo Chemistry", "USGS Data Catalog (SDC)"], + "category": "Biology", + "purpose": "Nostrud ullamco ea id consequat ex. Tempor deserunt laborum amet ex quis culpa laborum Lorem Lorem sunt do sit excepteur. Sunt ea velit non magna ut Lorem magna eu aute aliquip.", + "point_of_contact": "Ernest O. Lawrence", + "originator": "Darleane C. Hoffman", + "metadata_contact": "Glenn T. 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+import { ThemeProvider } from '@mui/material/styles'; +import { CssBaseline } from '@mui/material'; +import { LocalizationProvider } from '@mui/x-date-pickers'; +import { AdapterDayjs } from '@mui/x-date-pickers/AdapterDayjs' +import { routes } from '@generouted/react-router' +import { theme } from './theme'; +import { AppProvider } from './context/ContextProvider'; +import { ApiModal } from './components/ApiModal'; +import { RouterProvider, createBrowserRouter } from 'react-router-dom'; + +const App: React.FC = () => { + return ( + + + + + + + + + + ); +} + +export default App; diff --git a/strudel_ex/gbif-app/src/assets/react.svg b/strudel_ex/gbif-app/src/assets/react.svg new file mode 100644 index 00000000..6c87de9b --- /dev/null +++ b/strudel_ex/gbif-app/src/assets/react.svg @@ -0,0 +1 @@ + \ No newline at end of file diff --git a/strudel_ex/gbif-app/src/components/ApiModal.tsx b/strudel_ex/gbif-app/src/components/ApiModal.tsx new file mode 100644 index 00000000..7fad313e --- /dev/null +++ b/strudel_ex/gbif-app/src/components/ApiModal.tsx @@ -0,0 +1,73 @@ +import * as React from 'react'; +import { useAppState } from '../context/ContextProvider'; +import { closeApiModal } from '../context/actions'; +import { Button, Modal, Paper, Stack, TextField, Typography } from '@mui/material'; +import { useState } from 'react'; + +export const ApiModal: React.FC = () => { + const app = useAppState(); + const [name, setName] = useState(''); + const [value, setValue] = useState(''); + + const handleClose = () => { + app.dispatch(closeApiModal()); + } + + const handleSubmit = () => { + localStorage.setItem('apiTokenName', name); + localStorage.setItem('apiTokenValue', value); + window.location.reload(); + } + + return ( +
+ + + + + API Authentication Required + + + Enter the name of your API token (e.g. X-ApiToken) and the value of your API token (e.g. abc123). + + { + setName(event.target.value); + }} + /> + { + setValue(event.target.value); + }} + /> + + + + +
+ ); +} \ No newline at end of file diff --git a/strudel_ex/gbif-app/src/components/AppLink.tsx b/strudel_ex/gbif-app/src/components/AppLink.tsx new file mode 100644 index 00000000..a84e4764 --- /dev/null +++ b/strudel_ex/gbif-app/src/components/AppLink.tsx @@ -0,0 +1,22 @@ +import React from 'react'; +import { Link, LinkProps } from '@mui/material'; +import { Link as RouterLink, To } from 'react-router-dom'; + +interface AppLinkProps extends LinkProps { + to: To; +} +/** + * Link component for in-app links. + * Wrapper for the MUI Link component with the + * react-router Link injected as the component so + * that in-app links work. + */ +export const AppLink: React.FC = ({ to, ...rest}) => { + return ( + + ) +} \ No newline at end of file diff --git a/strudel_ex/gbif-app/src/components/CheckboxList.tsx b/strudel_ex/gbif-app/src/components/CheckboxList.tsx new file mode 100644 index 00000000..94bad31b --- /dev/null +++ b/strudel_ex/gbif-app/src/components/CheckboxList.tsx @@ -0,0 +1,70 @@ +import React, { ReactNode, useEffect, useState } from 'react'; +import { Box, Button, Checkbox, FormControlLabel, FormGroup, FormGroupProps, FormLabel, IconButton, Paper, PaperProps, Stack, TextField, TextFieldProps, Typography } from '@mui/material'; +import CloseIcon from '@mui/icons-material/Close'; + +type CheckboxOptionValue = string | number; + +export interface CheckboxOption { + label: string; + value: CheckboxOptionValue; +} + +interface CheckboxListProps extends Omit { + options: CheckboxOption[]; + onChange?: (values: CheckboxOptionValue[] | null) => any; +} + +export const CheckboxList: React.FC = ({ + options = [], + onChange, + ...rest +}) => { + const [values, setValues] = useState(null); + + const handleChange = (checked: boolean, value: CheckboxOption['value']) => { + if (values === null && checked) { + setValues([value]); + } else if (values !== null && checked) { + setValues([...values, value]); + } else if (values !== null && !checked) { + const newValues = values.filter((v) => v !== value); + if (newValues.length > 0) { + setValues(newValues); + } else { + setValues(null); + } + } + }; + + useEffect(() => { + if (onChange) onChange(values); + }, [values]); + + return ( + + {options.map((option, i) => ( + handleChange(checked, option.value)} + sx={{ + pr: 1, + pl: 0, + pb: 0, + pt: 0 + }} + /> + } + sx={{ + '&:not(:last-child)': { + mb: 1 + } + }} + /> + ))} + + ); +} \ No newline at end of file diff --git a/strudel_ex/gbif-app/src/components/Collapsible.tsx b/strudel_ex/gbif-app/src/components/Collapsible.tsx new file mode 100644 index 00000000..d7d0258d --- /dev/null +++ b/strudel_ex/gbif-app/src/components/Collapsible.tsx @@ -0,0 +1,76 @@ +import React, { ReactNode, useEffect, useState } from 'react'; +import { Box, Stack, StackProps } from '@mui/material'; +import KeyboardArrowRightIcon from '@mui/icons-material/KeyboardArrowRight'; +import KeyboardArrowDownIcon from '@mui/icons-material/KeyboardArrowDown'; + +export interface CollapsibleProps extends StackProps { + color?: string; + label: ReactNode; + isOpen?: boolean; +} + +export const Collapsible: React.FC = ({ + color, + label, + isOpen = false, + children, + ...rest +}) => { + const [isOpenState, setIsOpenState] = useState(isOpen); + + const handleClick = () => { + setIsOpenState(!isOpenState); + } + + useEffect(() => { + setIsOpenState(isOpen); + }, [isOpen]); + + return ( + + + + {!isOpenState && ( + + )} + {isOpenState && ( + + )} + {label} + + + {isOpenState && ( + + {children} + + )} + + ) +} \ No newline at end of file diff --git a/strudel_ex/gbif-app/src/components/FilterField.tsx b/strudel_ex/gbif-app/src/components/FilterField.tsx new file mode 100644 index 00000000..64f8f7e5 --- /dev/null +++ b/strudel_ex/gbif-app/src/components/FilterField.tsx @@ -0,0 +1,46 @@ +import React, { ReactNode } from 'react'; +import { Box, Stack, StackProps, Typography } from '@mui/material'; +import { Collapsible } from './Collapsible'; + +interface FilterFieldProps extends StackProps { + label: ReactNode; + filter: ReactNode; + isCollapsible?: boolean; +} + +export const FilterField: React.FC = ({ + label, + filter, + isCollapsible, + color, + ...rest +}) => { + const defaultLabel = ( + + {label} + + ); + const labelComponent = typeof label === 'string' ? defaultLabel : label; + + return ( + <> + {isCollapsible ? ( + + + {filter} + + + ): ( + + {labelComponent} + + {filter} + + + )} + + ) +} \ No newline at end of file diff --git a/strudel_ex/gbif-app/src/components/FilterGroup.tsx b/strudel_ex/gbif-app/src/components/FilterGroup.tsx new file mode 100644 index 00000000..ef6ba638 --- /dev/null +++ b/strudel_ex/gbif-app/src/components/FilterGroup.tsx @@ -0,0 +1,50 @@ +import React, { useEffect, useState } from 'react'; +import { Box, BoxProps, Button, Checkbox, FormControlLabel, FormGroup, FormLabel, IconButton, Paper, PaperProps, Stack, TextField, TextFieldProps, Typography } from '@mui/material'; +import { Collapsible, CollapsibleProps } from './Collapsible'; + +interface FilterGroupProps extends CollapsibleProps { + isCollapsible?: boolean; +} + +export const FilterGroup: React.FC = ({ + label, + isCollapsible, + children, + ...rest +}) => { + const defaultLabel = ( + + {label} + + ); + const labelComponent = typeof label === 'string' ? defaultLabel : label; + + return ( + <> + {isCollapsible ? ( + + + {children} + + + ): ( + + {labelComponent} + + {children} + + + )} + + + ) +} \ No newline at end of file diff --git a/strudel_ex/gbif-app/src/components/Filters.tsx b/strudel_ex/gbif-app/src/components/Filters.tsx new file mode 100644 index 00000000..6ab8d441 --- /dev/null +++ b/strudel_ex/gbif-app/src/components/Filters.tsx @@ -0,0 +1,28 @@ +import React from 'react'; +import { IconButton, Paper, PaperProps, Stack, Typography } from '@mui/material'; +import CloseIcon from '@mui/icons-material/Close'; + + +interface FilterPanelProps extends PaperProps { + onClose?: () => any; +} + +export const Filters: React.FC = ({ + onClose, + children, + ...rest +}) => { + return ( + + + + FILTERS + + + + {children} + + + + ) +} \ No newline at end of file diff --git a/strudel_ex/gbif-app/src/components/FiltersPanel.tsx b/strudel_ex/gbif-app/src/components/FiltersPanel.tsx new file mode 100644 index 00000000..7449c5de --- /dev/null +++ b/strudel_ex/gbif-app/src/components/FiltersPanel.tsx @@ -0,0 +1,46 @@ +import CloseIcon from '@mui/icons-material/Close'; +import { IconButton, Stack, StackProps, Typography } from '@mui/material'; +import React from 'react'; + +enum FilterType { + CHECKBOX_LIST = 'CHECKBOX_LIST', + RANGE_SLIDER = 'RANGE_SLIDER', +} + +interface Filter { + label: string; + field: string; + type: FilterType; + defaultValue: any; +} + +interface FiltersProps extends StackProps { + filters?: Filter[]; + onChange?: () => any; + onClose?: () => any; +} + +const initFilterValues = (filters: Filter[]) => { + const filterValues: any = {}; + filters.forEach((filter) => { + filterValues[filter.field] = filter.defaultValue; + }) +}; + +export const Filters: React.FC = ({ + onClose, + children, + ...rest +}) => { + return ( + + + FILTERS + + + + {children} + + + ) +} \ No newline at end of file diff --git a/strudel_ex/gbif-app/src/components/Footer.tsx b/strudel_ex/gbif-app/src/components/Footer.tsx new file mode 100644 index 00000000..b05c820a --- /dev/null +++ b/strudel_ex/gbif-app/src/components/Footer.tsx @@ -0,0 +1,51 @@ +import { Box, Container, Grid, Stack, Typography } from '@mui/material'; +import React from 'react'; +import { config } from '../../strudel.config'; +import { AppLink } from './AppLink'; +import { ImageWrapper } from './ImageWrapper'; + +/** + * Bottom footer component + */ +export const Footer: React.FC = () => { + return ( + + + + + + {config.footer.links.map((link, i) => ( + + {link.label} + + ))} + + + + + {config.footer.info} + {config.footer.image && ( + + + + + + )} + + + + + + ) +} \ No newline at end of file diff --git a/strudel_ex/gbif-app/src/components/ImageWrapper.css b/strudel_ex/gbif-app/src/components/ImageWrapper.css new file mode 100644 index 00000000..69237dde --- /dev/null +++ b/strudel_ex/gbif-app/src/components/ImageWrapper.css @@ -0,0 +1,9 @@ +.relative-height { + height: 100%; + width: auto; +} + +.relative-width { + height: auto; + width: 100%; +} \ No newline at end of file diff --git a/strudel_ex/gbif-app/src/components/ImageWrapper.tsx b/strudel_ex/gbif-app/src/components/ImageWrapper.tsx new file mode 100644 index 00000000..7211fe6a --- /dev/null +++ b/strudel_ex/gbif-app/src/components/ImageWrapper.tsx @@ -0,0 +1,40 @@ +import { Box, BoxProps } from '@mui/material'; +import React from 'react'; +import './ImageWrapper.css'; + +interface ImageWrapperProps extends BoxProps { + height?: string | number; + width?: string | number; +} + +/** + * Generic image wrapper component for sizing images relatively + * based on container sizes. Provide either a height or width and + * the image will size to that value and maintain its aspect ratio. + */ +export const ImageWrapper: React.FC = ({ + height, + width, + sx, + children, + ...rest +}) => { + return ( + + {React.Children.map(children, (child) => { + if (React.isValidElement(child)) { + const imgClass = width ? 'relative-width' : 'relative-height'; + return React.cloneElement(child as React.ReactElement, { className: `${child.props.className} ${imgClass}` }); + } + })} + + ); +} \ No newline at end of file diff --git a/strudel_ex/gbif-app/src/components/LabelValueTable.tsx b/strudel_ex/gbif-app/src/components/LabelValueTable.tsx new file mode 100644 index 00000000..28e04552 --- /dev/null +++ b/strudel_ex/gbif-app/src/components/LabelValueTable.tsx @@ -0,0 +1,61 @@ +import React, { ReactNode } from 'react'; +import { Table, TableBody, TableCell, TableProps, TableRow } from '@mui/material'; + +interface LabelValuePair { + label: ReactNode; + value: ReactNode; +} + +export interface LabelValueTableProps extends TableProps { + rows?: LabelValuePair[]; + labelWidth?: number; +} + +/** + * Component for displaying a flat list of label-value pairs + * in a two column table. + */ +export const LabelValueTable: React.FC = ({ + rows, + labelWidth = 150, + ...rest +}) => { + return ( + + + {rows?.map((row, i) => ( + + + {row.label} + + + {row.value} + + + ))} + +
+ ) +} \ No newline at end of file diff --git a/strudel_ex/gbif-app/src/components/Layout.tsx b/strudel_ex/gbif-app/src/components/Layout.tsx new file mode 100644 index 00000000..b0ce9834 --- /dev/null +++ b/strudel_ex/gbif-app/src/components/Layout.tsx @@ -0,0 +1,27 @@ +import { Box, Stack } from '@mui/material'; +import React, { PropsWithChildren } from 'react'; +import { Footer } from './Footer'; +import { TopBar } from './TopBar'; + +/** + * Basic layout with navbar and footer + */ +export const Layout: React.FC = ({ children }) => { + return ( + + + + {children} + +