diff --git a/package-lock.json b/package-lock.json
index 0a77f9618..9d96b4996 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -15,7 +15,7 @@
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-        "async-lock": "^1.4.0",
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         "citation-js": "^0.5.7",
         "collapse-whitespace": "^1.1.7",
@@ -23,19 +23,19 @@
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-        "fp-ts": "^2.16.1",
-        "fs-extra": "^11.1.1",
+        "fp-ts": "^2.16.5",
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         "github-slugger": "^1.5.0",
         "globby": "^11.1.0",
         "hyperscript": "^2.0.2",
         "is-docker": "^2.2.1",
         "jimp": "^0.22.10",
-        "js-beautify": "^1.14.9",
+        "js-beautify": "^1.15.1",
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         "jsdom": "^22.1.0",
         "json5": "^2.2.3",
-        "jsonld": "^8.3.1",
+        "jsonld": "^8.3.2",
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@@ -55,7 +55,7 @@
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         "remark-stringify": "^8.1.1",
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+        "remark-sub-super": "^1.0.21",
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         "tar": "^6.1.15",
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+    "node_modules/@isaacs/cliui": {
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+      "resolved": "https://registry.npmjs.org/@isaacs/cliui/-/cliui-8.0.2.tgz",
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+        "strip-ansi-cjs": "npm:strip-ansi@^6.0.1",
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+      },
+      "engines": {
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+      }
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+      "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-6.0.1.tgz",
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+      "engines": {
+        "node": ">=12"
+      },
+      "funding": {
+        "url": "https://github.com/chalk/ansi-regex?sponsor=1"
+      }
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+      "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-6.2.1.tgz",
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+      "engines": {
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+      "funding": {
+        "url": "https://github.com/chalk/ansi-styles?sponsor=1"
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+      "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-9.2.2.tgz",
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+    },
+    "node_modules/@isaacs/cliui/node_modules/string-width": {
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+      "resolved": "https://registry.npmjs.org/string-width/-/string-width-5.1.2.tgz",
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+      "dependencies": {
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+        "emoji-regex": "^9.2.2",
+        "strip-ansi": "^7.0.1"
+      },
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+      "funding": {
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+      }
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+    "node_modules/@isaacs/cliui/node_modules/strip-ansi": {
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+      "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-7.1.0.tgz",
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+      "dependencies": {
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+      },
+      "engines": {
+        "node": ">=12"
+      },
+      "funding": {
+        "url": "https://github.com/chalk/strip-ansi?sponsor=1"
+      }
+    },
+    "node_modules/@isaacs/cliui/node_modules/wrap-ansi": {
+      "version": "8.1.0",
+      "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-8.1.0.tgz",
+      "integrity": "sha512-si7QWI6zUMq56bESFvagtmzMdGOtoxfR+Sez11Mobfc7tm+VkUckk9bW2UeffTGVUbOksxmSw0AA2gs8g71NCQ==",
+      "dependencies": {
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+        "string-width": "^5.0.1",
+        "strip-ansi": "^7.0.1"
+      },
+      "engines": {
+        "node": ">=12"
+      },
+      "funding": {
+        "url": "https://github.com/chalk/wrap-ansi?sponsor=1"
+      }
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     "node_modules/@istanbuljs/load-nyc-config": {
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@@ -3935,6 +4024,15 @@
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+      "version": "0.11.0",
+      "resolved": "https://registry.npmjs.org/@pkgjs/parseargs/-/parseargs-0.11.0.tgz",
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+      "optional": true,
+      "engines": {
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+      }
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@@ -6579,9 +6677,12 @@
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+      "version": "2.0.0",
+      "resolved": "https://registry.npmjs.org/abbrev/-/abbrev-2.0.0.tgz",
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+      "engines": {
+        "node": "^14.17.0 || ^16.13.0 || >=18.0.0"
+      }
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     "node_modules/abort-controller": {
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@@ -6996,9 +7097,9 @@
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+      "version": "1.4.1",
+      "resolved": "https://registry.npmjs.org/async-lock/-/async-lock-1.4.1.tgz",
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+    "node_modules/eastasianwidth": {
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+      "resolved": "https://registry.npmjs.org/eastasianwidth/-/eastasianwidth-0.2.0.tgz",
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       "integrity": "sha1-C+4AUBiusmDQo6865ljdATbsG5k="
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+    "node_modules/foreground-child": {
+      "version": "3.1.1",
+      "resolved": "https://registry.npmjs.org/foreground-child/-/foreground-child-3.1.1.tgz",
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+        "cross-spawn": "^7.0.0",
+        "signal-exit": "^4.0.1"
+      },
+      "engines": {
+        "node": ">=14"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/isaacs"
+      }
+    },
+    "node_modules/foreground-child/node_modules/cross-spawn": {
+      "version": "7.0.3",
+      "resolved": "https://registry.npmjs.org/cross-spawn/-/cross-spawn-7.0.3.tgz",
+      "integrity": "sha512-iRDPJKUPVEND7dHPO8rkbOnPpyDygcDFtWjpeWNCgy8WP2rXcxXL8TskReQl6OrB2G7+UJrags1q15Fudc7G6w==",
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+        "shebang-command": "^2.0.0",
+        "which": "^2.0.1"
+      },
+      "engines": {
+        "node": ">= 8"
+      }
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+    "node_modules/foreground-child/node_modules/path-key": {
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+      "resolved": "https://registry.npmjs.org/path-key/-/path-key-3.1.1.tgz",
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+      "resolved": "https://registry.npmjs.org/shebang-regex/-/shebang-regex-3.0.0.tgz",
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+      "engines": {
+        "node": ">=8"
+      }
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+    "node_modules/foreground-child/node_modules/signal-exit": {
+      "version": "4.1.0",
+      "resolved": "https://registry.npmjs.org/signal-exit/-/signal-exit-4.1.0.tgz",
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+      "engines": {
+        "node": ">=14"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/isaacs"
+      }
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+    "node_modules/foreground-child/node_modules/which": {
+      "version": "2.0.2",
+      "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz",
+      "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==",
+      "dependencies": {
+        "isexe": "^2.0.0"
+      },
+      "bin": {
+        "node-which": "bin/node-which"
+      },
+      "engines": {
+        "node": ">= 8"
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@@ -12389,9 +12575,9 @@
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+      "resolved": "https://registry.npmjs.org/fp-ts/-/fp-ts-2.16.5.tgz",
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@@ -12424,9 +12610,9 @@
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@@ -14599,6 +14785,23 @@
         "node": ">= 4"
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+    "node_modules/jackspeak": {
+      "version": "2.3.6",
+      "resolved": "https://registry.npmjs.org/jackspeak/-/jackspeak-2.3.6.tgz",
+      "integrity": "sha512-N3yCS/NegsOBokc8GAdM8UcmfsKiSS8cipheD/nivzr700H+nsMOxJjQnvwOcRYVuFkdH0wGUvW2WbXGmrZGbQ==",
+      "dependencies": {
+        "@isaacs/cliui": "^8.0.2"
+      },
+      "engines": {
+        "node": ">=14"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/isaacs"
+      },
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+      "resolved": "https://registry.npmjs.org/js-beautify/-/js-beautify-1.15.1.tgz",
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-        "nopt": "^6.0.0"
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@@ -16909,7 +17113,7 @@
         "js-beautify": "js/bin/js-beautify.js"
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-        "node": ">=12"
+        "node": ">=14"
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@@ -16921,32 +17125,54 @@
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-        "inherits": "2",
-        "minimatch": "^5.0.1",
-        "once": "^1.3.0"
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+        "jackspeak": "^2.3.6",
+        "minimatch": "^9.0.1",
+        "minipass": "^7.0.4",
+        "path-scurry": "^1.10.2"
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-        "node": ">=12"
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       "funding": {
         "url": "https://github.com/sponsors/isaacs"
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@@ -39840,6 +40312,15 @@
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@@ -41872,9 +42364,9 @@
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@@ -43354,11 +43846,11 @@
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@@ -46940,9 +47453,9 @@
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@@ -47908,6 +48421,28 @@
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+    "string-width-cjs": {
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+      "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz",
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+        "is-fullwidth-code-point": "^3.0.0",
+        "strip-ansi": "^6.0.1"
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+          "resolved": "https://registry.npmjs.org/is-fullwidth-code-point/-/is-fullwidth-code-point-3.0.0.tgz",
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@@ -47935,6 +48470,21 @@
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+      "version": "npm:strip-ansi@6.0.1",
+      "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz",
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+          "version": "5.0.1",
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       "resolved": "https://registry.npmjs.org/strip-bom/-/strip-bom-4.0.0.tgz",
@@ -50025,6 +50575,39 @@
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+    "wrap-ansi-cjs": {
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+      "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-7.0.0.tgz",
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+        "string-width": "^4.1.0",
+        "strip-ansi": "^6.0.0"
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+          "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-4.3.0.tgz",
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+          "resolved": "https://registry.npmjs.org/color-convert/-/color-convert-2.0.1.tgz",
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+          "resolved": "https://registry.npmjs.org/color-name/-/color-name-1.1.4.tgz",
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diff --git a/package.json b/package.json
index 7d167f9fb..1679d6018 100644
--- a/package.json
+++ b/package.json
@@ -50,7 +50,7 @@
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-    "async-lock": "^1.4.0",
+    "async-lock": "^1.4.1",
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     "citation-js": "^0.5.7",
     "collapse-whitespace": "^1.1.7",
@@ -58,19 +58,19 @@
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     "fastest-levenshtein": "^1.0.16",
-    "fp-ts": "^2.16.1",
-    "fs-extra": "^11.1.1",
+    "fp-ts": "^2.16.5",
+    "fs-extra": "^11.2.0",
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     "github-slugger": "^1.5.0",
     "globby": "^11.1.0",
     "hyperscript": "^2.0.2",
     "is-docker": "^2.2.1",
     "jimp": "^0.22.10",
-    "js-beautify": "^1.14.9",
+    "js-beautify": "^1.15.1",
     "js-yaml": "^4.1.0",
     "jsdom": "^22.1.0",
     "json5": "^2.2.3",
-    "jsonld": "^8.3.1",
+    "jsonld": "^8.3.2",
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@@ -90,7 +90,7 @@
     "remark-math": "^3.0.1",
     "remark-parse": "^8.0.3",
     "remark-stringify": "^8.1.1",
-    "remark-sub-super": "^1.0.20",
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     "sentence-case": "^3.0.4",
     "tar": "^6.1.15",
     "temp-dir": "^2.0.0",