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using foldcomp database with a foldseek search #38

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emzodls opened this issue Jul 25, 2023 · 1 comment
Open

using foldcomp database with a foldseek search #38

emzodls opened this issue Jul 25, 2023 · 1 comment
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@emzodls
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emzodls commented Jul 25, 2023

I'm trying to use a foldcomp database (esmatlas_v2023_02) for a foldseek search. I downloaded following the instructions, when I try to use easy-search though I get this error:

Input database "foldcomp_DB/esmatlas_v2023_02" has the wrong type (Generic)
Allowed input:

  • Index
  • Nucleotide
  • Profile
  • Aminoacid

Am I missing a step? Do I need to decompress the database and convert it to pdb files first?

Thanks,

Emzo

@khb7840
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khb7840 commented Jul 26, 2023

Please try foldseek createdb for foldcomp database and run foldseek on the generated foldseek database. Also, check that v2023_02 is a partial update from initial release to 02/2023. If you want the whole esmatlas, please use esmatlas

@khb7840 khb7840 added the question Further information is requested label Aug 9, 2023
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