DESCRIPTION

Package: NetCoMi
Type: Package
Title: Network Construction and Comparison for Microbiome Data
Version: 1.1.0
Date: 2022-11-20
Authors@R: c(
    person("Stefanie", "Peschel", email = "stefpeschel@gmail.com", 
    role = c("aut", "cre"), comment = c(ORCID = "0000-0002-7936-7627")),
    person("Christian L.", "Müller", role = "ctb", comment = c(ORCID = "0000-0002-3821-7083")),
    person("Anne-Laure", "Boulesteix", role = "ctb", comment = c(ORCID = "0000-0002-2729-0947")),
    person("Erika", "von Mutius", role = "ctb", comment = c(ORCID = "0000-0002-8893-4515")),
    person("Martin", "Depner", role = "ctb")
  )
Description: NetCoMi offers functions for constructing, analyzing, and comparing 
    microbial association networks as well as dissimilarity-based networks for 
    microbial compositional data. It also includes functionality for 
    constructing differential association networks.
License: GPL-3 + file LICENSE
URL: https://netcomi.de, https://github.com/stefpeschel/NetCoMi
BugReports: https://github.com/stefpeschel/NetCoMi/issues
Depends: SpiecEasi (>= 1.0.6)
biocViews:
Imports: 
    Biobase,
    corrplot,
    doSNOW,
    fdrtool,
    filematrix,
    foreach,
    graphics,
    grDevices,
    gtools,
    huge,
    igraph,
    MASS,
    Matrix,
    mixedCCA (>= 1.6.2),
    orca,
    phyloseq,
    pulsar,
    qgraph,
    RColorBrewer,
    Rdpack,
    rlang,
    SPRING,
    stats,
    utils,
    vegan,
    WGCNA
Remotes: 
    github::zdk123/SpiecEasi,
    github::GraceYoon/SPRING,
    github::vmikk/metagMisc,
    github::tpq/propr,
    github::HCBravoLab/metagenomeSeq
Suggests:
    BiocManager,
    cccd,
    ccrepe,
    DESeq2,
    discordant,
    knitr,
    LaplacesDemon,
    limma,
    metagenomeSeq,
    metagMisc,
    propr,
    rmarkdown,
    testthat,
    zCompositions
RdMacros: Rdpack
Encoding: UTF-8
RoxygenNote: 7.3.2
VignetteBuilder: knitr