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main.tf
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main.tf
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provider "google" {
project = var.project
region = local.region
zone = var.zone
}
locals {
region = join("-", slice(split("-", var.zone), 0, 2))
network_storage = [{
server_ip = data.tfe_outputs.slurm_network.values.filestore_ip_home
remote_mount = data.tfe_outputs.slurm_network.values.filestore_name_home
local_mount = "/home"
fs_type = "nfs"
mount_options = "hard,timeo=600,retrans=3,rsize=1048576,wsize=1048576,resvport,async"
},{
server_ip = data.tfe_outputs.slurm_network.values.filestore_ip_app
remote_mount = data.tfe_outputs.slurm_network.values.filestore_name_app
local_mount = "/apps"
fs_type = "nfs"
mount_options = "hard,timeo=600,retrans=3,rsize=1048576,wsize=1048576,resvport,async"
},{
server_ip = null
remote_mount = var.results_bucket
local_mount = "/mnt/results"
fs_type = "gcsfuse"
mount_options = "file_mode=777,dir_mode=777,allow_other,_netdev"
},{
server_ip = null
remote_mount = var.input_vcfs_bucket
local_mount = "/mnt/vcfs"
fs_type = "gcsfuse"
mount_options = "file_mode=444,dir_mode=555,allow_other,_netdev,implicit_dirs,billing_project=genome-variant-server"
},{
server_ip = null
remote_mount = var.crams_1000g_bucket
local_mount = "/mnt/crams_1000g"
fs_type = "gcsfuse"
mount_options = "file_mode=444,dir_mode=555,allow_other,_netdev,implicit_dirs,billing_project=genome-variant-server"
},{
server_ip = null
remote_mount = var.crams_topmed_bucket
local_mount = "/mnt/crams_topmed"
fs_type = "gcsfuse"
mount_options = "file_mode=444,dir_mode=555,allow_other,_netdev,implicit_dirs,billing_project=genome-variant-server"
},{
server_ip = null
remote_mount = var.crams_ccdg_bucket
local_mount = "/mnt/crams_ccdg"
fs_type = "gcsfuse"
mount_options = "file_mode=444,dir_mode=555,allow_other,_netdev,implicit_dirs,billing_project=genome-variant-server"
},{
server_ip = null
remote_mount = var.crams_ccdg_tmp_bucket
local_mount = "/mnt/crams_ccdg_tmp"
fs_type = "gcsfuse"
mount_options = "file_mode=444,dir_mode=555,allow_other,_netdev,implicit_dirs,billing_project=genome-variant-server"
}]
partitions = [
{ name = "bravo"
machine_type = "c2-standard-4"
static_node_count = 1
max_node_count = 1
zone = var.zone
image = "projects/schedmd-slurm-public/global/images/family/schedmd-slurm-21-08-6-debian-10"
image_hyperthreads = true
compute_disk_type = "pd-standard"
compute_disk_size_gb = 20
compute_labels = {}
cpu_platform = null
gpu_count = 0
gpu_type = null
network_storage = []
preemptible_bursting = "spot"
vpc_subnet = data.google_compute_subnetwork.slurm_subnet.self_link
exclusive = false
enable_placement = false
regional_capacity = false
regional_policy = {}
instance_template = null
},
{ name = "highcpu"
machine_type = "n1-highcpu-8"
static_node_count = 0
max_node_count = 40
zone = var.zone
image = "projects/schedmd-slurm-public/global/images/family/schedmd-slurm-21-08-6-debian-10"
image_hyperthreads = true
compute_disk_type = "pd-standard"
compute_disk_size_gb = 20
compute_labels = {}
cpu_platform = null
gpu_count = 0
gpu_type = null
network_storage = []
preemptible_bursting = "spot"
vpc_subnet = data.google_compute_subnetwork.slurm_subnet.self_link
exclusive = false
enable_placement = false
regional_capacity = false
regional_policy = {}
instance_template = null
},
{ name = "highmem"
machine_type = "n2-highmem-4"
static_node_count = 0
max_node_count = 80
zone = var.zone
image = "projects/schedmd-slurm-public/global/images/family/schedmd-slurm-21-08-6-debian-10"
image_hyperthreads = true
compute_disk_type = "pd-standard"
compute_disk_size_gb = 20
compute_labels = {}
cpu_platform = null
gpu_count = 0
gpu_type = null
network_storage = []
preemptible_bursting = "spot"
vpc_subnet = data.google_compute_subnetwork.slurm_subnet.self_link
exclusive = false
enable_placement = false
regional_capacity = false
regional_policy = {}
instance_template = null
},
{ name = "annotate_q"
machine_type = "n1-highcpu-16"
static_node_count = 0
max_node_count = 80
zone = var.zone
image = "projects/schedmd-slurm-public/global/images/family/schedmd-slurm-21-08-6-debian-10"
image_hyperthreads = true
compute_disk_type = "pd-standard"
compute_disk_size_gb = 20
compute_labels = {}
cpu_platform = null
gpu_count = 0
gpu_type = null
network_storage = []
preemptible_bursting = "spot"
vpc_subnet = data.google_compute_subnetwork.slurm_subnet.self_link
exclusive = false
enable_placement = false
regional_capacity = false
regional_policy = {}
instance_template = null
},
{ name = "small_jobs_q"
machine_type = "c2d-highcpu-8"
static_node_count = 0
max_node_count = 80
zone = var.zone
image = "projects/schedmd-slurm-public/global/images/family/schedmd-slurm-21-08-6-debian-10"
image_hyperthreads = true
compute_disk_type = "pd-standard"
compute_disk_size_gb = 20
compute_labels = {}
cpu_platform = null
gpu_count = 0
gpu_type = null
network_storage = []
preemptible_bursting = "spot"
vpc_subnet = data.google_compute_subnetwork.slurm_subnet.self_link
exclusive = false
enable_placement = false
regional_capacity = false
regional_policy = {}
instance_template = null
},
{ name = "vep_q"
machine_type = "n1-highmem-8"
static_node_count = 0
max_node_count = 140
zone = var.zone
image = "projects/schedmd-slurm-public/global/images/family/schedmd-slurm-21-08-6-debian-10"
image_hyperthreads = true
compute_disk_type = "pd-standard"
compute_disk_size_gb = 20
compute_labels = {}
cpu_platform = null
gpu_count = 0
gpu_type = null
network_storage = []
preemptible_bursting = "spot"
vpc_subnet = data.google_compute_subnetwork.slurm_subnet.self_link
exclusive = false
enable_placement = false
regional_capacity = false
regional_policy = {}
instance_template = null
},
{ name = "merge_q"
machine_type = "n2-highcpu-2"
static_node_count = 0
max_node_count = 24
zone = var.zone
image = "projects/schedmd-slurm-public/global/images/family/schedmd-slurm-21-08-6-debian-10"
image_hyperthreads = true
compute_disk_type = "pd-ssd"
compute_disk_size_gb = 60
compute_labels = {}
cpu_platform = null
gpu_count = 0
gpu_type = null
network_storage = []
preemptible_bursting = "spot"
vpc_subnet = data.google_compute_subnetwork.slurm_subnet.self_link
exclusive = false
enable_placement = false
regional_capacity = false
regional_policy = {}
instance_template = null
},
{ name = "agg_q"
machine_type = "n2-highmem-8"
static_node_count = 0
max_node_count = 96
zone = var.zone
image = "projects/schedmd-slurm-public/global/images/family/schedmd-slurm-21-08-6-debian-10"
image_hyperthreads = true
compute_disk_type = "pd-standard"
compute_disk_size_gb = 20
compute_labels = {}
cpu_platform = null
gpu_count = 0
gpu_type = null
network_storage = []
preemptible_bursting = "spot"
vpc_subnet = data.google_compute_subnetwork.slurm_subnet.self_link
exclusive = false
enable_placement = false
regional_capacity = false
regional_policy = {}
instance_template = null
},
{ name = "agg_demand_q"
machine_type = "n2-highmem-8"
static_node_count = 0
max_node_count = 24
zone = var.zone
image = "projects/schedmd-slurm-public/global/images/family/schedmd-slurm-21-08-6-debian-10"
image_hyperthreads = true
compute_disk_type = "pd-standard"
compute_disk_size_gb = 20
compute_labels = {}
cpu_platform = null
gpu_count = 0
gpu_type = null
network_storage = []
preemptible_bursting = false
vpc_subnet = data.google_compute_subnetwork.slurm_subnet.self_link
exclusive = false
enable_placement = false
regional_capacity = false
regional_policy = {}
instance_template = null
}
]
}
#############################################################
# Get network & storage from supporting terraform workspace #
#############################################################
# To lookup filestore_ip, network_name, subnet_name
data "tfe_outputs" "slurm_network" {
organization = "statgen"
workspace = "bravo-slurm-network"
}
data "google_compute_subnetwork" "slurm_network" {
name = data.tfe_outputs.slurm_network.values.network_name
}
data "google_compute_subnetwork" "slurm_subnet" {
name = data.tfe_outputs.slurm_network.values.subnet_name
}
#######################################################
# Provision slurm infrastructure within given network #
#######################################################
module "common" {
source = "./modules/common"
}
###########
# Network #
###########
# Network and storage provided by supporting terraform workspace
##############################
# Controller, Login, Compute #
##############################
module "slurm_cluster_controller" {
source = "./modules/controller"
boot_disk_size = var.controller_disk_size_gb
boot_disk_type = var.controller_disk_type
image = var.controller_image
# instance_template = var.controller_instance_template
cluster_name = var.cluster_name
network_storage = local.network_storage
partitions = local.partitions
project = var.project
region = local.region
compute_node_scopes = ["https://www.googleapis.com/auth/monitoring.write",
"https://www.googleapis.com/auth/logging.write",
"https://www.googleapis.com/auth/devstorage.read_write"]
# compute_node_service_account = var.compute_node_service_account
# disable_compute_public_ips = var.disable_compute_public_ips
# disable_controller_public_ips = var.disable_controller_public_ips
labels = var.controller_labels
# login_network_storage = var.login_network_storage
# login_node_count = var.login_node_count
machine_type = var.controller_machine_type
# munge_key = var.munge_key
# jwt_key = var.jwt_key
# secondary_disk = var.controller_secondary_disk
# secondary_disk_size = var.controller_secondary_disk_size
# secondary_disk_type = var.controller_secondary_disk_type
# shared_vpc_host_project = var.shared_vpc_host_project
scopes = ["cloud-platform", "compute-rw", "monitoring-write","logging-write","storage-rw"]
# service_account = var.controller_service_account
subnet_depend = data.google_compute_subnetwork.slurm_subnet.self_link
subnetwork_name = data.google_compute_subnetwork.slurm_subnet.self_link
# suspend_time = var.suspend_time
# complete_wait_time = var.complete_wait_time
zone = var.zone
# intel_select_solution = var.intel_select_solution
## Required Runtime Scripts
## Provided by 'common' module instead of external file refs.
controller_startup_script = module.common.custom_controller_install
compute_startup_script = module.common.custom_compute_install
metadata_startup_script = module.common.metadata_startup_script
cgroup_conf_tpl = module.common.cgroup_conf_tpl
setup_script = module.common.setup_script
slurm_resume = module.common.slurm_resume
slurm_suspend = module.common.slurm_suspend
slurm_conf_tpl = module.common.slurm_conf_tpl
slurmdbd_conf_tpl = module.common.slurmdbd_conf_tpl
slurmsync = module.common.slurmsync
util_script = module.common.util_script
}
module "slurm_cluster_login" {
source = "./modules/login"
# boot_disk_size = var.login_disk_size_gb
# boot_disk_type = var.login_disk_type
image = var.login_image
# instance_template = var.login_instance_template
cluster_name = var.cluster_name
controller_name = module.slurm_cluster_controller.controller_node_name
# controller_secondary_disk = var.controller_secondary_disk
# disable_login_public_ips = var.disable_login_public_ips
labels = var.login_labels
# login_network_storage = var.login_network_storage
machine_type = var.login_machine_type
node_count = var.login_node_count
region = local.region
# scopes = var.login_node_scopes
scopes = ["cloud-platform", "monitoring-write","logging-write","storage-rw"]
# service_account = var.login_node_service_account
# munge_key = var.munge_key
network_storage = local.network_storage
subnet_depend = data.google_compute_subnetwork.slurm_subnet.self_link
subnetwork_name = data.google_compute_subnetwork.slurm_subnet.self_link
zone = var.zone
## Required Runtime Scripts
## Provided by 'common' module instead of external file refs.
login_startup_script = module.common.custom_compute_install
metadata_startup_script = module.common.metadata_startup_script
util_script = module.common.util_script
setup_script = module.common.setup_script
}
module "slurm_cluster_compute" {
source = "./modules/compute"
cluster_name = var.cluster_name
controller_name = module.slurm_cluster_controller.controller_node_name
network_storage = local.network_storage
partitions = local.partitions
project = var.project
region = local.region
scopes = ["monitoring-write","logging-write","storage-rw"]
subnet_depend = data.google_compute_subnetwork.slurm_subnet.self_link
subnetwork_name = data.google_compute_subnetwork.slurm_subnet.self_link
zone = var.zone
## Required Runtime Scripts
## Provided by 'common' module instead of external file refs.
compute_startup_script = module.common.custom_compute_install
metadata_startup_script = module.common.metadata_startup_script
util_script = module.common.util_script
setup_script = module.common.setup_script
}