Bus error

[rainbow218]

hi,

i encountered an error (BUS error) while running RAREMETAL and would like to seek help with trouble shooting.

please see the following stdout from the run:

(raremetal) [pchanmy@nscc02 1209-2022]$ raremetal --summaryFiles test_sum_files --covFiles test_cov_files --groupFile ttsh_chi_chr1_all_genes_marker_group \

--SKAT --longOutput --tabulateHits --hitsCutoff 1e-05
--prefix TEST --hwe 1.0e-05 --callRate 0.95

RAREMETAL 4.15.1 -- A Tool for Rare Variants Meta-Analyses for Quantitative Traits
(c) 2012-2017 Shuang Feng, Dajiang Liu, Sai Chen, Goncalo Abecasis

Please go to "http://genome.sph.umich.edu/wiki/RAREMETAL" for the newest version.

Options:
List of Studies : --summaryFiles [test_sum_files],
--covFiles [test_cov_files]
Grouping Methods : --groupFile [ttsh_chi_chr1_all_genes_marker_group],
--annotatedVcf [], --annotation [], --writeVcf
QC Options : --hwe [1.0e-05], --callRate [0.95]
Association Methods : --burden, --MB, --MAB, --BBeta, --SKAT [ON], --VT,
--condition []
Other Options : --labelHits, --geneMap [../data/refFlat_hg19.txt],
--correctGC, --prefix [TEST], --maf [0.05],
--longOutput [ON], --tabulateHits [ON], --dosage,
--hitsCutoff [1.0e-05], --altMAF, --range [],
--useExact, --normPop, --popFile [], --relateBinary,
--debug, --matchOnly, --matchByAbs,
--matchDist [0.00], --minMatchMAF [0.00],
--maxMatchMAF [1.00], --dosageOptionFile [],
--sumCaseAC
PhoneHome : --noPhoneHome, --phoneHomeThinning [100]

Analysis started at: Mon Sep 12 02:55:00 2022

Pooling summary statistics from study 1 ...

Warning: 2584 variants are skipped from analysis due to duplicate records in study /home/project/13001375/penny/GWAS/rvtest/ttsh/ttsh_chi_chr1.MetaScore.assoc.gz. Please check log for details.

done
Pooling summary statistics from study 2 ...

Warning: 9599 variants are skipped from analysis due to duplicate records in study /home/project/13001375/penny/GWAS/rvtest/helios/helios_chi_chr1.MetaScore.assoc.gz. Please check log for details.

done
Pooling summary statistics from study 3 ...

Warning: 6251 variants are skipped from analysis due to duplicate records in study /home/project/13001375/penny/GWAS/rvtest/mec/mec_chi_chr1.MetaScore.assoc.gz. Please check log for details.

done
Warning: 12514 variants have been excluded from analysis due to un-matched alleles. Please check log file for details.

Performing Single variant meta analysis ...
Genomic Control for all studies are listed below:
0.967701 0.957287 1.02665
done.

Checking if all groups are analyzed...
Please check log file for groups that are not analyzed.

    done!

Reading cov matrix from study 1 ...
done
Reading cov matrix from study 2 ...
Bus error

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appreciate any insight or advice,
thank you!