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To account for relatedness in the sample,
NOTHING WILL BE DONE
Sanity checking input files ...
completed.
Friendly reminder: if your file has a lot of individuals not genotyped, the following process might take very long ... done.
Analyzing trait "pheno1" ...
Matching individuals in phenotype and genotypes ...
Found xxxxx phenotyped AND genotyped individuals from xxxxx families.
done.
Start fitting linear model ... Exiting, exception thrown: std::bad_alloc_**
The text was updated successfully, but these errors were encountered:
Hi All,
Found std::bad_alloc error while running the raremetalworker with ped & vcf files. Help need in fixing this.
**```
The command run :-
$ raremetalworker --ped in.ped --dat in_new.dat --vcf in_new1.vcf.gz --traitName pheno1 --inverseNormal --makeResiduals --prefix test2_nxy
**_#
The output screens
Please go to "http://genome.sph.umich.edu/wiki/RAREMETAL_DOWNLOAD_%26_BUILD#Where_to_Download" for the latest version.
Options:
Input Files : --ped [in.ped], --dat [in_new.dat],
--vcf [in_new1.vcf.gz], --dosage, --binary
Output Files : --prefix [test2_nxy], --LDwindow [1000000], --zip,
--thin, --labelHits
VC Options : --vcX, --separateX
Trait Options : --makeResiduals [ON], --inverseNormal [ON],
--traitName [pheno1]
Model Options : --recessive, --dominant
Kinship Source : --kinPedigree, --kinGeno, --kinFile [], --kinxFile [],
--kinSave
Kinship Options : --kinMaf [0.05], --kinMiss [0.05]
Chromosome X : --xLabel [X], --xStart [2699520], --xEnd [154931044],
--maleLabel [1], --femaleLabel [2]
others : --cpu [1], --kinOnly,
--geneMap [../data/refFlat_hg19.txt], --mergedVCFID
PhoneHome : --noPhoneHome, --phoneHomeThinning [100]
Analysis started at: Mon Jul 19 13:02:31 2021
Loading PED/DAT files ...
Loading DAT files ...done.
Loading PED files ...done.
Loading data used 1.2 seconds.
To account for relatedness in the sample,
NOTHING WILL BE DONE
Sanity checking input files ...
completed.
Friendly reminder: if your file has a lot of individuals not genotyped, the following process might take very long ... done.
Analyzing trait "pheno1" ...
Matching individuals in phenotype and genotypes ...
Found xxxxx phenotyped AND genotyped individuals from xxxxx families.
done.
Start fitting linear model ... Exiting, exception thrown: std::bad_alloc_**
The text was updated successfully, but these errors were encountered: