mkdocs.yml

site_name: TOPMed Imputation Server
theme: readthedocs

nav:
- Home: index.md
- Getting Started: getting-started.md
- Data Preparation: prepare-your-data.md
- Reference Panels: reference-panels.md
- Pipeline Overview: pipeline.md
- Security: data-sensitivity.md
- FAQ: faq.md
- Contact: contact.md
- Developer Documentation:
  - API: api.md
- Workshop (ASHG2023):
    - Overview: workshops/ASHG2023.md
    - "Session 1: Imputation and the Server": workshops/ASHG2023/Session1.md
    - "Session 2: Run a job, Data Preparation and Data Download": workshops/ASHG2023/Session2.md
    - "Session 3: Performing GWAS using imputed data": workshops/ASHG2023/Session3.md
    - "Session 4: nf-gwas, Imputation Bot and PGS Server": workshops/ASHG2023/Session4.md
    - "Session 5: HLA Imputation": workshops/ASHG2023/Session5.md
    - "Session 6: TOPMed Imputation Server": workshops/ASHG2023/Session6.md

repo_name: statgen/imputationserver
repo_url: https://github.com/statgen/imputationserver
edit_uri: edit/release/docs

extra:
  social:
    - type: github-alt
      link: https://github.com/statgen/imputationserver
    - type: twitter
      link: https://twitter.com/umimpute

markdown_extensions:
    - toc:
        permalink: True
    - admonition: {}