Skip to content

Issues: sstadick/perbase

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

21 Open 25 Closed
21 Open 25 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

For bam files aligned to transcriptome, I am getting the error 'Unknown sequence name'?
#75 opened Sep 10, 2024 by mohamedbahru
Update version for smartstring crate
#74 opened Sep 7, 2024 by nkkarpov
1
not all region return when using a bed file
#71 opened Feb 14, 2024 by FunGeST
1
bgzipped and indexed reference fasta
#70 opened Feb 5, 2024 by darked89
Index out of bounds
#68 opened Oct 3, 2023 by ChristopherRichie
4
Difference only-depth and base-depth
#67 opened Oct 2, 2023 by Akazhiel
3
weird encoding for reference name
#66 opened Jun 26, 2023 by twaddlac
7
from_pileup_mate_aware very inefficient?
#64 opened May 30, 2023 by brentp
2
parameters for sparse data
#63 opened May 26, 2023 by brentp
1
New Tool for Per-Sequence Depths
#62 opened May 25, 2023 by oschwengers
1
accessing qpos() ?
#60 opened May 23, 2023 by brentp
2
base-depth become extremely slow when calculating highly covered site. bug Something isn't working enhancement New feature or request
#59 opened Nov 16, 2022 by y9c
8
Missing bam/cram file should return an error code bug Something isn't working
#57 opened Sep 29, 2022 by patbohn
2
Add Forward/Reverse mapping counts enhancement New feature or request
#54 opened Jul 8, 2022 by 25shmeckles
2
Support bedGraph output in only-depth enhancement New feature or request
#46 opened Dec 1, 2021 by ghuls
1
Add PGO pass
#39 opened Jul 12, 2021 by sstadick
Create Benchmarking Suite investigation
#31 opened Nov 16, 2020 by sstadick
@sstadick
Clean up error messages enhancement New feature or request
#24 opened Oct 29, 2020 by sstadick
@sstadick
Look into writing my own pileup engine investigation
#11 opened Sep 27, 2020 by sstadick
2
Add an indepth tool that outputs more metrics enhancement New feature or request
#8 opened Sep 27, 2020 by sstadick
Add support of readgroup awareness and filtering enhancement New feature or request
#6 opened Sep 27, 2020 by sstadick
ProTip! Type g i on any issue or pull request to go back to the issue listing page.