end-to-end-gee-package.sh

# rm -R code/end_to_end_gee
# mkdir code/end_to_end_gee
cp -R ~/projects/End-to-End-GEE/01-Earth-Engine-Basics code/end_to_end_gee/
cp -R ~/projects/End-to-End-GEE/02-Earth-Engine-Intermediate code/end_to_end_gee/
cp -R ~/projects/End-to-End-GEE/03-Supervised-Classification code/end_to_end_gee/
cp -R ~/projects/End-to-End-GEE/04-Change-Detection code/end_to_end_gee/
cp -R ~/projects/End-to-End-GEE/05-Earth-Engine-Apps code/end_to_end_gee/
cp -R ~/projects/End-to-End-GEE/Supplement code/end_to_end_gee/
cp -R ~/projects/End-to-End-GEE/Assignments code/end_to_end_gee/

# Python notebooks
# Clear output from cells before packaging
jupyter-nbconvert --ClearOutputPreprocessor.enabled=True --inplace code/end_to_end_gee/*.ipynb
jupyter-nbconvert --to markdown  code/end_to_end_gee/*.ipynb --output-dir end-to-end-gee-output/
# image paths need to be set relative to the folder. Replace it with sed
sed -i '' -E 's/\((.+_files)/\(end-to-end-gee-output\/\1/g' end-to-end-gee-output/*.md