.gitignore

# INDRA specific ignores
elsevier_api_keys
cr_clickthrough_key
biogrid_api_key
data

.ipynb_checkpoints
models

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]

# C extensions
*.so

# Distribution / packaging
.Python
env/
bin/
build/
develop-eggs/
dist/
eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.cache
nosetests.xml
coverage.xml

# Translations
*.mo

# Mr Developer
.mr.developer.cfg
.project
.pydevproject

# Rope
.ropeproject

# Django stuff:
*.log
*.pot

# Sphinx documentation
doc/_build/
doc/_templates/
doc/_static/

# Vim temp files
*.swp
large_corpus.rdf

# Data files
*.rdf
*.owl
*.xml
*.nxml
*.bel
*.json
*.bson
*.dat

# Documents, graphs, images
*.pdf
*.dot
*.bngl
*.jpg

# Pickle
*.pkl

# JARs
*.jar

.eggs
.coverage
cover
setuptools*.zip

indra/literature/elsevier_api_key
indra/literature/cr_clickthrough_key
indra/benchmarks/assembly_eval/batch4/trips
indra/benchmarks/assembly_eval/batch4/reach
models/fallahi_eval/output
indra/sources/eidos/cache/geonames/index/
indra/tests/tempfile.html

# Other
*.txt
*.cx
*.zip
*.csv
*.java
*.xbel
*.tsv
*.ai
*.png
*.eps
*.gz

# For the cool cats using PyCharm
.idea
.idea/*

.pytest_cache
.DS_Store
.noseids
.venv