diff --git a/AlphaFold2.ipynb b/AlphaFold2.ipynb index 7f0e9d3b..384455b4 100644 --- a/AlphaFold2.ipynb +++ b/AlphaFold2.ipynb @@ -35,7 +35,7 @@ "colab_type": "text" }, "source": [ - "\"Open" + "\"Open" ] }, { @@ -144,7 +144,7 @@ " echo \"installing colabfold...\"\n", " # install dependencies\n", " # We have to use \"--no-warn-conflicts\" because colab already has a lot preinstalled with requirements different to ours\n", - " pip install -q --no-warn-conflicts \"colabfold[alphafold-minus-jax] @ git+https://github.com/sokrypton/ColabFold\"\n", + " pip install -q --no-warn-conflicts \"colabfold[alphafold-minus-jax] @ git+https://github.com/sokrypton/ColabFold@v1.5.1\"\n", " # high risk high gain\n", " pip install -q \"jax[cuda11_cudnn805]>=0.3.8,<0.4\" -f https://storage.googleapis.com/jax-releases/jax_releases.html\n", "\n", diff --git a/README.md b/README.md index 01fb3a18..1114fe89 100644 --- a/README.md +++ b/README.md @@ -12,8 +12,8 @@ For details of what was changed in v1.5, see [change log](https://github.com/sok | Notebooks | monomers | complexes | mmseqs2 | jackhmmer | templates | | :-------- | ------- | --------- | ------- | --------- | ----------- | -| [AlphaFold2_mmseqs2](https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb) | Yes | Yes | Yes | No | Yes | -| [AlphaFold2_batch](https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/batch/AlphaFold2_batch.ipynb) | Yes | Yes | Yes | No | Yes | +| [AlphaFold2_mmseqs2](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.1/AlphaFold2.ipynb) | Yes | Yes | Yes | No | Yes | +| [AlphaFold2_batch](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.1/batch/AlphaFold2_batch.ipynb) | Yes | Yes | Yes | No | Yes | | [RoseTTAFold](https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/RoseTTAFold.ipynb) | Yes | No | Yes | No | No | | [AlphaFold2](https://colab.research.google.com/github/deepmind/alphafold/blob/main/notebooks/AlphaFold.ipynb) (from Deepmind) | Yes | Yes | No | Yes | No | | [ESMFold](https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/ESMFold.ipynb) | Yes | Maybe | No | No| No | diff --git a/batch/AlphaFold2_batch.ipynb b/batch/AlphaFold2_batch.ipynb index a423e778..2a4e48db 100644 --- a/batch/AlphaFold2_batch.ipynb +++ b/batch/AlphaFold2_batch.ipynb @@ -26,7 +26,7 @@ "colab_type": "text" }, "source": [ - "\"Open" + "\"Open" ] }, { @@ -119,7 +119,7 @@ "if [ ! -f COLABFOLD_READY ]; then\n", " # install dependencies\n", " # We have to use \"--no-warn-conflicts\" because colab already has a lot preinstalled with requirements different to ours\n", - " pip install -q --no-warn-conflicts \"colabfold[alphafold-minus-jax] @ git+https://github.com/sokrypton/ColabFold\"\n", + " pip install -q --no-warn-conflicts \"colabfold[alphafold-minus-jax] @ git+https://github.com/sokrypton/ColabFold@v1.5.1\"\n", " # high risk high gain\n", " pip install -q \"jax[cuda11_cudnn805]>=0.3.8,<0.4\" -f https://storage.googleapis.com/jax-releases/jax_releases.html\n", " touch COLABFOLD_READY\n",