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  1. gen-file-processing gen-file-processing Public

    Various utilities for processing sequence and annotation file types common in genomics

    Python

  2. sleuth sleuth Public

    Forked from pachterlab/sleuth

    Inspect kallisto RNA-Seq output

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  3. Naqvi17-code Naqvi17-code Public

    R and Python Code used in Naqvi et al, Genome Research 2019, doi: 10.1101/gr.230433.117

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  4. umis umis Public

    Forked from vals/umis

    Tools for processing UMI RNA-tag data

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  5. sircel sircel Public

    Forked from pachterlab/sircel

    Identify cell barcodes from single-cell genomics sequencing experiments

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  6. pgc_scrnaseq pgc_scrnaseq Public

    Code for analyzing single-cell RNA-seq data from Li et al, Cell Stem Cell 2017