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Vertebrate-level brain atlas, questions about evolutionary distanct integration #62
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In addition, I checked but couldn't find any relevant code and parameter usage related to the frog-zebrafish integration in your paper. The Jupyter notebook you provided is not the version you generated for the paper, the graph and integration in your paper are great but frog-zebrafish with default parameters is not that good. |
The jupyter notebook is the version used in the paper (same hyperparameters, the random seed will be slightly different but this shouldn't make a hude difference), how were the results different? How are you judging how well the species are integrated? You should try transferring labels between species and measuring accuracy. |
Dear authors,
Thank you for giving us such a wonderful toolkit!
If I want to build an evolutionary distance atlas, should we use major cell type level as "cell_type" label?
Is there any other parameters you would recommend we could tune to make the atlas better since the default results doesn't integrated well.
Thank you for your help!
Best wishes,
Yuanzhen
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