From fee10e16d179faf7b6d723dda62bf7502a0686ef Mon Sep 17 00:00:00 2001 From: Felix Wiegand Date: Tue, 30 Jul 2024 10:18:08 +0200 Subject: [PATCH] Add missing negation --- workflow/rules/common.smk | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk index 6b8a263c..a3067c8c 100644 --- a/workflow/rules/common.smk +++ b/workflow/rules/common.smk @@ -102,9 +102,9 @@ def is_single_end(sample, unit): def get_fastqs(wildcards): """Get raw FASTQ files from unit sheet.""" - if column_missing_or_empty("bam_single", units, wildcards.sample, wildcards.unit): + if not column_missing_or_empty("bam_single", units, wildcards.sample, wildcards.unit): return f"results/fastq/{wildcards.sample}-{wildcards.unit}.fq.gz" - elif column_missing_or_empty("bam_paired", units, wildcards.sample, wildcards.unit): + elif not column_missing_or_empty("bam_paired", units, wildcards.sample, wildcards.unit): return expand( "results/fastq/{sample}-{unit}.{read}.fq.gz", sample=wildcards.sample,