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snpeff with custom genome database #13

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RvV1979 opened this issue Sep 12, 2019 · 0 comments
Open

snpeff with custom genome database #13

RvV1979 opened this issue Sep 12, 2019 · 0 comments

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@RvV1979
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RvV1979 commented Sep 12, 2019

I wish to apply this workflow to a non-model plant genome for which no reference is readily available at the snpEff database. Is there a way to direct snpEff to a genbank accession or, alternatively, a custom snpEff annotation database?
Thanks for your advice
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@RvV1979