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test.yml
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# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Test
on:
push:
branches: [master]
pull_request:
branches: [master]
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
run-notebook-tutorials:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install ".[dev,github-actions,graph,mqf2]"
- name: Show dependencies
run: python -m pip list
- name: Run example notebooks
run: build_tools/run_examples.sh
shell: bash
pytest:
name: Run pytest
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-13, windows-latest]
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Setup macOS
if: runner.os == 'macOS'
run: |
brew install libomp # https://github.com/pytorch/pytorch/issues/20030
- name: Get full Python version
id: full-python-version
shell: bash
run: echo version=$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") >> $GITHUB_OUTPUT
- name: Install dependencies
shell: bash
run: |
pip install ".[dev,github-actions,graph,mqf2]"
- name: Show dependencies
run: python -m pip list
- name: Run pytest
shell: bash
run: python -m pytest tests
- name: Statistics
run: |
pip install coverage
coverage report
coverage xml
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v1
if: always()
continue-on-error: true
with:
token: ${{ secrets.CODECOV_TOKEN }}
file: coverage.xml
flags: cpu,pytest
name: CPU-coverage
fail_ci_if_error: false
docs:
name: Docs build
runs-on: ubuntu-latest
defaults:
run:
shell: bash
steps:
- name: Check out Git repository
uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v1
with:
python-version: 3.11
- name: Cache pip
uses: actions/cache@v2
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('docs/requirements.txt') }}
restore-keys: ${{ runner.os }}-pip-
- name: Install dependencies
run: |
sudo apt-get update --fix-missing
sudo apt-get install -y pandoc
pip install -r docs/requirements.txt
- name: Build sphinx documentation
working-directory: docs/
run: make html --debug --jobs 2 SPHINXOPTS="-W"
- name: Upload built docs
uses: actions/upload-artifact@v2
with:
name: docs-results-${{ runner.os }}-${{ matrix.python-version }}-${{ matrix.requires }}
path: docs/build/html/
# Use always() to always run this step to publish test results when there are test failures
#if: success()