From 762609282e9d47297511ab9f225f633e38408ae0 Mon Sep 17 00:00:00 2001 From: tlfobe Date: Wed, 28 Feb 2024 14:36:46 -0700 Subject: [PATCH] created a test_env.yml file with `mamba env export --from-history`, which only puts the installs that were included via `mamba install ...`, rather than all packages installed --- .github/workflows/python-package.yml | 2 +- test_env.yml | 29 ++++++++++++++++++++++++++++ 2 files changed, 30 insertions(+), 1 deletion(-) create mode 100644 test_env.yml diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 95a5d1d6..74eab611 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -27,7 +27,7 @@ jobs: - name: Install conda environment uses: mamba-org/setup-micromamba@v1 with: - environment-file: environment.yml + environment-file: test_env.yml create-args: >- python=${{ matrix.python-version }} - name: Install dependencies diff --git a/test_env.yml b/test_env.yml new file mode 100644 index 00000000..3c8491d7 --- /dev/null +++ b/test_env.yml @@ -0,0 +1,29 @@ +name: terphenyl +channels: + - conda-forge + - omnia +dependencies: + - python + - pip + - pyyaml + - mbuild=0.14.2 + - mdtraj + - numpy + - matplotlib + - scikit-learn + - tqdm + - mdanalysis + - signac + - signac-flow + - panedr + - pandas + - seaborn + - openff-toolkit + - mbuild ==0.14 + - rdkit + - ca-certificates + - certifi + - openssl + - pytest + - openbabel +prefix: /home/lenny/miniforge3/envs/terphenyl