DESCRIPTION

Package: signals
Title: Single Cell Genomes with Allele Specificity
Version: 0.11.1
Author@R: c(person("Marc", "Williams", email = "marcjwilliams1@gmail.com",
                  role = c("aut", "cre")),
            person("Tyler", "Funnell",
                  role = c("cbt")))
Author: Marc J Williams [aut, cre],
  Tyler Funnell [ctb]
Maintainer: Marc J Williams <marcjwilliams1@gmail.com>
Description: signals (SIngle cell Genomes with Allele Specificity) 
    is a tool to estimate allele and haplotype specific copy number states in single cells with low coverage (~0.01X). 
    signals phases alleles based on losses and gains across all cells and then assigns allele specific states for each bin 
    in each cell using a hidden markov model.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
Depends:
    R (>= 3.5.0)
biocViews:
Imports: 
    data.table,
    magrittr,
    dplyr,
    uwot,
    dbscan,
    gtools,
    forcats,
    ComplexHeatmap,
    GenomicRanges,
    cowplot,
    ape,
    RColorBrewer,
    tidyr,
    ggplot2,
    S4Vectors,
    scales,
    Rcpp,
    ggrepel,
    grid,
    ggforce,
    ggtree
RoxygenNote: 7.3.1
Suggests: 
    knitr,
    rmarkdown,
    markdown,
    testthat (>= 2.1.0),
    VGAM,
    covr,
    ggrastr,
    VIBER,
    Seurat,
    plyranges
Remotes: 
  caravagnalab/easypar,
  caravagnalab/VIBER
VignetteBuilder: knitr
LinkingTo: 
    Rcpp