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references.bib
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@article{birdsongs_ML_new,
author = {Roberto Bistel and Alejandro Martinez and Gabriel B. Mindlin},
doi = {10.1016/J.CHAOS.2022.112803},
issn = {09600779},
journal = {Chaos, Solitons and Fractals},
keywords = {Birdsong,Models of phonation,Neural networks},
month = {12},
publisher = {Elsevier Ltd},
title = {An analysis of the persistence of Zonotrichia capensis themes using dynamical systems and machine learning tools},
volume = {165},
year = {2022},
}
@article{Neuromuscular ,
title = {Neuromuscular control of vocalizations in birdsong: A model},
author = {Laje, Rodrigo and Gardner, Timothy J. and Mindlin, Gabriel B.},
journal = {Phys. Rev. E},
volume = {65},
issue = {5},
pages = {051921},
numpages = {8},
year = {2002},
month = {May},
publisher = {American Physical Society},
doi = {10.1103/PhysRevE.65.051921},
url = {https://link.aps.org/doi/10.1103/PhysRevE.65.051921}
}
@article{muscles_role,
abstract = {1. The contribution of syringeal muscles to controlling the phonology of song was studied by recording bilateral airflow, subsyringeal air sac pressure, electromyograms (EMGs) of six syringeal musc...},
author = {Franz Goller and Roderick A. Suthers},
doi = {10.1152/JN.1996.76.1.287},
issn = {00223077},
issue = {1},
journal = {https://doi.org/10.1152/jn.1996.76.1.287},
pages = {287-300},
pmid = {8836225},
publisher = { American Physiological Society Bethesda, MD },
title = {Role of syringeal muscles in controlling the phonology of bird song},
volume = {76},
url = {https://journals.physiology.org/doi/10.1152/jn.1996.76.1.287},
year = {1996},
}
@article{OEC_circuit,
author = {Yonatan Sanz Perl and Ezequiel M. Arneodo and Ana Amador and Franz Goller and Gabriel B. Mindlin},
doi = {10.1103/PHYSREVE.84.051909/FIGURES/8/MEDIUM},
issn = {15393755},
issue = {5},
journal = {Physical Review E - Statistical, Nonlinear, and Soft Matter Physics},
month = {11},
pages = {051909},
publisher = {American Physical Society},
title = {Reconstruction of physiological instructions from Zebra finch song},
volume = {84},
url = {https://journals.aps.org/pre/abstract/10.1103/PhysRevE.84.051909},
year = {2011},
}
@article{OEC_units,
abstract = {Some birds make use of a distensible oral cavity to produce nearly pure-tone song. Songbirds such as the Northern cardinal (Cardinalis cardinalis) have a muscularly distended oropharyngeal-esophage...},
author = {Neville H. Fletcher and Tobias Riede and Roderick A. Suthers},
doi = {10.1121/1.2159434},
issn = {0001-4966},
issue = {2},
journal = {The Journal of the Acoustical Society of America},
keywords = {acoustic analysis,bioacoustics,biocommunications,hearing,physiology},
month = {1},
pages = {1005},
pmid = {16521762},
publisher = {Acoustical Society of AmericaASA},
title = {Model for vocalization by a bird with distensible vocal cavity and open beak},
volume = {119},
url = {https://asa.scitation.org/doi/abs/10.1121/1.2159434},
year = {2006},
}
@article{syrinx_first_model,
abstract = {We present a model of sound production in a songbird’s vocal organ and find that much of the complexity of the song of the canary (Serinus canaria) can be produced from simple time variations in forcing functions. The starts, stops, and pauses between syllables, as well as variation in pitch and timbre are inherent in the mechanics and can often be expressed through smooth and simple variations in the frequency and relative phase of two driving parameters. © 2001 American Physical Society.},
author = {Tim Gardner and G. Cecchi and M. Magnasco and R. Laje and Gabriel B. Mindlin},
doi = {10.1103/PhysRevLett.87.208101},
issn = {10797114},
issue = {20},
journal = {Physical Review Letters},
month = {10},
pages = {208101},
publisher = {American Physical Society},
title = {Simple Motor Gestures for Birdsongs},
volume = {87},
url = {https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.87.208101},
year = {2001},
}
@article{complete_model,
author = {Ana Amador and Yonatan Sanz Perl and Gabriel B. Mindlin and Daniel Margoliash},
doi = {10.1038/nature11967},
issn = {1476-4687},
issue = {7439},
journal = {Nature 2013 495:7439},
keywords = {Birdsong},
month = {2},
pages = {59-64},
pmid = {23446354},
publisher = {Nature Publishing Group},
title = {Elemental gesture dynamics are encoded by song premotor cortical neurons},
volume = {495},
url = {https://www.nature.com/articles/nature11967},
year = {2013},
}
@article{Syrinx_muscles,
author = {Ole Næsbye Larsen and Franz Goller},
doi = {10.1242/JEB.205.1.25},
issn = {0022-0949},
issue = {1},
journal = {Journal of Experimental Biology},
keywords = {Brain stimulation,Brown thrasher,Cardinalis cardinalis,Cockatiel,Endoscopic analysis,Muscle stimulation,Northern cardinal,Nymphicus hollandicus,Syrinx,Toxostoma rufum},
month = {1},
pages = {25-35},
pmid = {11818409},
publisher = {The Company of Biologists},
title = {Direct observation of syringeal muscle function in songbirds and a parrot},
volume = {205},
url = {https://journals.biologists.com/jeb/article/205/1/25/33066/Direct-observation-of-syringeal-muscle-function-in},
year = {2002},
}
@article{dissimilarity_acoustic_indices,
author = {Laurent Lellouch and Sandrine Pavoine and Frédéric Jiguet and Hervé Glotin and Jérôme Sueur},
doi = {10.1111/2041-210X.12178},
issn = {2041210X},
issue = {6},
journal = {Methods in Ecology and Evolution},
keywords = {Beta diversity,Bioacoustics,Bird dawn chorus,Bird diversity monitoring and assessment,Community dynamics},
pages = {495-505},
publisher = {British Ecological Society},
title = {Monitoring temporal change of bird communities with dissimilarity acoustic indices},
volume = {5},
year = {2014},
}
@book{book_signal_processing,
title = {Discrete-Time Signal Processing},
author = {Alan V Oppenheim; Ronald W Schafer},
publisher = {Pearson Education},
isbn = {9781292025728; 1292025727},
year = {2014},
edition = {3; internat.},
url = {libgen.li/file.php?md5=f463f6828ce5da6bfee3860d96886f39}}
@book{signal_book_modern,
author = {S. Palani},
doi = {10.1007/978-3-030-96322-4},
journal = {Principles of Digital Signal Processing},
publisher = {Springer International Publishing},
title = {Principles of Digital Signal Processing},
url = {https://link.springer.com/book/10.1007/978-3-030-96322-4},
year = {2022},
}
@article{poo,
abstract = {Object-oriented programming (OOP) is the practice of creating a software architecture that enables flexibility through modular design. A programmer who is object-oriented isn’t necessarily one who is a more advanced coder, but one who chooses to be a more...},
author = {Ben Smith},
city = {Berkeley, CA},
doi = {10.1007/978-1-4302-3615-3_1},
journal = {AdvancED ActionScript 3.0: Design Patterns},
pages = {1-25},
publisher = {Apress},
title = {Object-Oriented Programming},
url = {https://link.springer.com/chapter/10.1007/978-1-4302-3615-3_1},
year = {2011},
}
% ---------------------- libraries
@inproceedings{librosa,
title={librosa: Audio and music signal analysis in python},
author={McFee, Brian and Raffel, Colin and Liang, Dawen and Ellis, Daniel PW and McVicar, Matt and Battenberg, Eric and Nieto, Oriol},
booktitle={Proceedings of the 14th python in science conference},
volume={8},
year={2015}
}
@article{maad,
doi = {10.1111/2041-210X.13711},
issn = {2041210X},
issue = {12},
journal = {Methods in Ecology and Evolution},
keywords = {acoustic indices,bioacoustics,ecoacoustics,pattern recognition,sound pressure level},
month = {12},
pages = {2334-2340},
publisher = {British Ecological Society},
title = {scikit-maad: An open-source and modular toolbox for quantitative soundscape analysis in Python},
volume = {12},
year = {2021},
}
@software{lmfit,
author = {Newville, Matthew and
Stensitzki, Till and
Allen, Daniel B. and
Ingargiola, Antonino},
title = {{LMFIT: Non-Linear Least-Square Minimization and
Curve-Fitting for Python}},
month = sep,
year = 2014,
publisher = {Zenodo},
version = {0.8.0},
doi = {10.5281/zenodo.11813},
url = {https://doi.org/10.5281/zenodo.11813}
}
@book{fourier_math,
title = {Fourier Series, Fourier Transforms, and Function Spaces: A Second Course in Analysis (AMS/MAA Textbooks)},
author = {Tim Hsu},
publisher = {American Mathematical Society},
isbn = {147045145X,9781470451455},
year = {2020},
series = {Ams/Maa Textbooks (Book 59)},
edition = {},
volume = {},
url = {https://bookstore.ams.org/text-59}
}
@book{fourier_signal,
author = {Chu, Eleanor},
year = {2008},
month = {03},
pages = {},
title = {Discrete and Continuous Fourier Transforms: Analysis, Applications and Fast Algorithms},
isbn = {9780429144752},
journal = {Discrete and Continuous Fourier Transforms: Analysis, Applications and Fast Algorithms},
doi = {10.1201/9781420063646}
}
% ------------------------WEBSITES -------------
@misc{birdsongs_cornell, title={Bird Song}, url={https://academy.allaboutbirds.org/birdsong/}, journal={Bird Academy The Cornell Lab How and Why Birds Sing Comments}, author={Thompson, Mya}, year={2014}, month={Aug}}
@misc{type_birdsongs, title={Bird Song}, url={https://www.allaboutbirds.org/news/how-to-listen-to-bird-song-tips-and-examples-from-the-warbler-guide/}, journal={How To Listen To Bird Song—Tips And Examples From The Warbler Guide}, author={The Cornell Lab}, year={2015}, month={May}}
@misc{birdanatomy, title={All about bird anatomy from Bird Academy}, url={https://academy.allaboutbirds.org/features/birdanatomy/}, journal={The Cornell Lab of Ornithology}, author={Ornithology, The Cornell Lab of}}
@article{siryx_image,
author = {Hernandez-Miranda, Luis and Birchmeier, Carmen},
year = {2018},
month = {09},
pages = {50-62},
title = {Mechanisms and Neuronal Control of Vocalization in Vertebrates},
volume = {4},
journal = {Opera Medica et Physiologica},
doi = {10.20388/omp2018.001.0059}
}
@misc{poo_coursera,
title={Why Learn About Object-Oriented Programming Languages?}, url={https://www.coursera.org/articles/object-oriented-programming-languages}, author={Coursera},
year={Jun 16, 2022}}
@book{book]_birdsongs,
author = {Mindlin, Gabriel and Laje, Rodrigo},
year = {2005},
month = {01},
pages = {},
title = {The Physics of Birdsong},
isbn = {3-540-25399-8},
journal = {The Physics of Birdsong: , Biological and Medical Physics, Biomedical Engineering. ISBN 978-3-540-25399-0. Springer-Verlag Berlin Heidelberg, 2005},
doi = {10.1007/3-540-28249-1}
}