copy_tissue.sh

rsync -rv --delete --mkpath /nrs/cellmap/data/jrc_22ak351-leaf-3m/staging/groundtruth.zarr/ /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles_smooth/tissue/other/jrc_22ak351-leaf-3m/groundtruth.zarr/
rsync -rv --delete --mkpath /nrs/cellmap/data/jrc_22ak351-leaf-3r/staging/groundtruth.zarr/ /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles_smooth/tissue/other/jrc_22ak351-leaf-3r/groundtruth.zarr/
rsync -rv --delete --mkpath /nrs/cellmap/data/jrc_mus-heart-1/staging/groundtruth.zarr/ /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles_smooth/tissue/other/jrc_mus-heart-1/groundtruth.zarr/
rsync -rv --delete --mkpath /nrs/cellmap/data/jrc_mus-kidney/staging/groundtruth.zarr/ /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles_smooth/tissue/other/jrc_mus-kidney/groundtruth.zarr/
rsync -rv --delete --mkpath /nrs/cellmap/data/jrc_mus-kidney-3/staging/groundtruth.zarr/ /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles_smooth/tissue/other/jrc_mus-kidney-3/groundtruth.zarr/
rsync -rv --delete --mkpath /nrs/cellmap/data/jrc_mus-kidney-glomerulus-2/staging/groundtruth.zarr/ /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles_smooth/tissue/other/jrc_mus-kidney-glomerulus-2/groundtruth.zarr/
rsync -rv --delete --mkpath /nrs/cellmap/data/jrc_mus-liver/staging/groundtruth.zarr/ /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles_smooth/tissue/other/jrc_mus-liver/groundtruth.zarr/
rsync -rv --delete --mkpath /nrs/cellmap/data/jrc_mus-liver-3/staging/groundtruth.zarr/ /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles_smooth/tissue/other/jrc_mus-liver-3/groundtruth.zarr/
rsync -rv --delete --mkpath /nrs/cellmap/data/jrc_mus-liver-zon-1/staging/groundtruth.zarr/ /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles_smooth/tissue/other/jrc_mus-liver-zon-1/groundtruth.zarr/
rsync -rv --delete --mkpath /nrs/cellmap/data/jrc_mus-liver-zon-2/staging/groundtruth.zarr/ /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles_smooth/tissue/other/jrc_mus-liver-zon-2/groundtruth.zarr/
rsync -rv --delete --mkpath /nrs/cellmap/data/jrc_mus-pancreas-1/staging/groundtruth.zarr/ /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles_smooth/tissue/other/jrc_mus-pancreas-1/groundtruth.zarr/
rsync -rv --delete --mkpath /nrs/cellmap/data/jrc_ut21-1413-003/staging/groundtruth.zarr/ /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles_smooth/tissue/other/jrc_ut21-1413-003/groundtruth.zarr/
rsync -rv --delete --mkpath /nrs/cellmap/data/jrc_zf-cardiac-1/staging/groundtruth.zarr/ /nrs/saalfeld/heinrichl/data/cellmap_labels/fly_organelles_smooth/tissue/other/jrc_zf-cardiac-1/groundtruth.zarr/