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<!DOCTYPE html>
<html>
<head>
<style type="text/css" title="text/css">
body
{
font-family: sans-serif;
margin:40px;
}
.example
{
margin:20px;
padding:20px;
background-color: rgb(222,222,222);
-webkit-border-radius: 10px;
}
</style>
<title>Phyloinformatics Course</title>
</head>
<body>
<h1>Phyloinformatics Course</h1>
<p>This web site supports a course on phyloinformatics.</p>
<h2></h2>
<h2>Course lectures</h2>
<p>Course lectures and notes are <a href="course/">available here</a>.</p>
<h2>Code</h2>
<p>Code for the examples is available on <a href="https://github.com/rdmpage/phyloinformatics" target="_new">GitHub</a></p>
<h2>Tools and services</h2>
<p>Example tools and services.</p>
<ul>
<li><a href="services/specimenparser.php">Specimen code parser</a></li>
<!--
<li><a href="treeviewer/tkml.php">Create KML for geophylogeny</a></li> -->
<li><a href="treeviewer/tv.php">Display tree from NEXUS file (or URL) in SVG</a></li>
</ul>
<p>Reconcilation services for Google Refine (see <a href="http://iphylo.blogspot.com/2012/02/using-google-refine-and-taxonomic.html" target="_new">Using Google Refine and taxonomic databases (EOL, NCBI, uBio, WORMS) to clean messy data</a> on how to use these).</p>
<ul>
<li><a href="http://www.eol.org">EOL</a> http://iphylo.org/~rpage/phyloinformatics/services/reconciliation_eol.php</li>
<li><a href="http://www.ncbi.nlm.nih.gov/Taxonomy/">NCBI taxonomy</a> http://iphylo.org/~rpage/phyloinformatics/services/reconciliation_ncbi.php</li>
<li><a href="http://www.ubio.org/tools/recognize.php">uBio FindIT</a> http://iphylo.org/~rpage/phyloinformatics/services/reconciliation_ubio.php</li>
<li><a href="http://www.marinespecies.org/">WORMS</a> http://iphylo.org/~rpage/phyloinformatics/services/reconciliation_worms.php</li><li><a href="http://www.gbif.org">GBIF</a> http://iphylo.org/~rpage/phyloinformatics/services/reconciliation_gbif.php</li>
</ul>
<h2>Demos</h2>
<table>
<tr>
<td><a href="mashup/">Mashup</a></td>
<td><a href="spacetree/">SpaceTree</a></td>
<td><a href="eoliphone/">EOL iPad webapp</a></td>
</tr>
<tr>
<td><a href="mashup/"><img src="images/mashup.png" height="200"></a></td>
<td><a href="spacetree/"><img src="images/spacetree.png" height="200"></a></td>
<td><a href="eoliphone/"><img src="images/ipad.png" height="200"></a></td>
</tr>
<tr>
</tr>
<td><a href="treemap/">Treemap</a></td>
<td><a href="blast/">BLAST sequence to get tree</a></td>
<td></td>
<tr>
<td><a href="treemap/"><img src="images/treemap.png" height="200"></a></td>
<td><a href="blast/"><img src="images/blast.png" height="200"></a></td>
<td></td>
</tr>
</table>
<div id="recentcomments" class="dsq-widget"><h2 class="dsq-widget-title">Recent Comments</h2><script type="text/javascript" src="http://phyloinformatics.disqus.com/recent_comments_widget.js?num_items=5&hide_avatars=0&avatar_size=32&excerpt_length=200"></script></div><a href="http://disqus.com/">Powered by Disqus</a>
</body>
</html>