Could you add the NCyc database to MetaCerberus?

[ywangbioinfo]

Thank for your great work.

I have tried MetaCerberus in my linux OS, it is fine.
Now I am going to annotate a genome, and will search for some denitrification genes. If MetaCerberus could integrate the NCyc database, it will be nice to me.

NCyc：a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes
https://github.com/qichao1984/NCyc

[raw-lab]

Good afternoon,

COG, KEGG, FOAMdb (especially should cover these) genes. Is there a particular set of genes you are looking for?
We are working on updating FOAMdb 2.0 to cover the genes that were in NCyc.

Also, if you have your own HMMs and metadata you should be able to do a custom database with MetaCerberus. We give instructions in the README for this.

Closing for now.

Let us know if you need a hand?

many thanks,
RAW Lab

[ywangbioinfo]

Hi, Thank you for your response. I am searching for denitrification genes like nirS/nirK. Since your new FOAM database will cover them, I think it is sufficient for me. Again, thanks for your great work. 2024年10月9日(水) 0:33 RAW Lab ***@***.***>:

…

Good afternoon, COG, KEGG, FOAMdb (especially should cover these) genes. Is there a particular set of genes you are looking for? We are working on updating FOAMdb 2.0 to cover the genes that were in NCyc. Also, if you have your own HMMs and metadata you should be able to do a custom database with MetaCerberus. We give instructions in the README for this. Closing for now. Let us know if you need a hand? many thanks, RAW Lab — Reply to this email directly, view it on GitHub <#23 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AVDBXR6XDE6JYJE722DGAD3Z2P3NFAVCNFSM6AAAAABLNTJXX2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDIMBQGE4DCMZSGU> . You are receiving this because you authored the thread.Message ID: ***@***.***>

[raw-lab]

We just made custom HMMs for nirK and nirS for a collaborator. Do you want nosZ as well? I can send you the links.

[raw-lab]

We have just made those HMMs do you want them?

[ywangbioinfo]

Thank you for your quick response.
I would like to receive the HMMs of nirS, nirK, and nosZ genes.